SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4938

Length: 1283 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene4938

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16099	12/41
SustainPine v2.0	sp_v2.0_unigene25359	22/41
SustainPine v2.0	sp_v2.0_unigene60310	5/41

Source	Descriptions	Term	Type	Identity
AutoFact	Peroxidase n=1 Tax=Cucumis melo subsp. melo RepID=E5GC51_CUCME	-	-	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	peroxidase	-	-	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	90%

Source	InterPros	Term	Type	e value	Identity
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	0.0	-
Sma3	Plant peroxidase	IPR000823	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNP1

Fln msg:

Fln protein: MGLWVVLALALSAQLLQSQAYNVVSSSNATGSYSENGLVMNYYGDSCPQAEEIIAEQVRLLYKRHKNTAFSWLRNIFHDCAVESCDASLLLDSTRNSISEKETDRSFGLRNFRYLDTIKEAVERECPGVVSCADILVLSARDGVVSLGGPYIPLKTGRRDGRKSRADVVENYLPDHNESISTVLSRFKAMGIDTRGVVALLGAHSVGRTHCVKLVHRLYPEVDPTLDPGHVEHMKHKCPDAIPNPKAVQYVRNDRGTPMKLDNNYYVNLMDNKGLLIVDQQLYADSRTRPYVKKMAKSQEYFFKYFSRALTILSENNPLTGTRGEIRRQCSLKNKLHTKSKR*

Protein Length: 344

Fln nts: ATGGGATGGGAAGAGCGAGAAG_-_ATGGGCCTGTGGGTAGTGCTGGCTTTGGCGCTCAGCGCGCAGTTGTTGCAGTCTCAGGCTTACAATGTGGTAAGTTCGAGCAATGCTACTGGGAGTTACAGTGAGAATGGATTGGTGATGAATTACTATGGGGACTCTTGCCCTCAGGCTGAAGAGATCATTGCTGAACAAGTACGCCTGCTGTACAAAAGACACAAGAACACTGCATTTTCGTGGCTTAGAAATATTTTCCATGACTGTGCTGTGGAGTCATGTGATGCATCGCTTCTGTTGGACTCAACAAGGAACAGCATATCAGAAAAGGAGACTGACAGGAGCTTCGGCCTTCGCAACTTTAGGTATTTGGATACCATCAAGGAAGCCGTGGAGAGGGAGTGCCCCGGGGTCGTTTCTTGCGCAGATATACTCGTTCTCTCTGCCAGAGATGGCGTTGTATCGTTGGGAGGGCCATACATTCCCCTGAAGACGGGAAGAAGAGATGGACGGAAGAGCAGAGCAGATGTGGTGGAGAATTACCTTCCCGATCACAATGAGAGCATCTCCACTGTTCTGTCTCGCTTCAAAGCCATGGGAATCGACACCCGTGGGGTTGTTGCACTGCTGGGGGCTCACAGTGTGGGGAGGACTCACTGCGTGAAGCTGGTGCACAGGCTGTACCCGGAAGTAGATCCGACACTGGACCCTGGGCACGTGGAGCACATGAAGCACAAGTGCCCGGACGCGATCCCCAACCCGAAGGCAGTGCAGTATGTGCGGAACGACCGGGGAACGCCTATGAAGCTGGACAACAACTACTACGTGAACCTGATGGACAACAAGGGGCTCCTCATAGTGGACCAGCAACTGTATGCAGATTCGAGGACCAGGCCGTATGTGAAGAAGATGGCAAAAAGCCAGGAATACTTCTTCAAATACTTCTCCCGGGCGCTCACCATCCTCTCTGAGAACAATCCTCTCACCGGCACTCGAGGAGAAATCCGTCGGCAGTGCTCGCTCAAAAACAAACTGCACACAAAAAGCAAGCGTTGA___GCGATAGCTCAATTCCGCAGTGATGGGAGTAATAGCGTGATGCCACAGTAGTGGGCATTTCATATATAAATTGCAGATTGCGTTTTTATTAGATAATCATAATGGTGTGGTGTCACTATGTTTTGCGATCACGTCGATGAACTACAACCGAACCGTGGAACAGTAGGCTTGTTTCCTTATGTAAGCAGAACCTTTTATTATAACAAAAAACaCAATCCTGTCTGTTATTACT

Fln Alignment:

Contig4938___MGLWVVXXXXXXXXXXXXXXYNVVSSSNATGSYSENGLVMNYYGDSCPQAEEIIAEQVRLLYKRHKNTAFSWLRNIFHDCAVESCDASLLLDSTRNSISEKETDRSFGLRNFRYLDTIKEAVERECPGVVSCADILVLSARDGVVSLGGPYIPLKTGRRDGRKSRADVVENYLPDHNESISTVLSRFKAMGIDTRGVVALLGAHSVGRTHCVKLVHRLYPEVDPTLDPGHVEHMKHKCPDAIPNPKAVQYVRNDRGTPMKLDNNYYVNLMDNKGLLIVDQQLYADSRTRPYVKKMAKSQEYFFKYFSRALTILSENNPLTGTRGEIRRQCSLKNKLHTKSKR
A9NNP1_________________MGRWVLLALALSAQLLQSQAYNVGSSSNTNGSYGENGLVMNYYGDSCPQAEEIIAEQVRLLYKRHKNTAFSWLRNIFHDCAVESCDASLLLDSTRKSISEKETDRSFGLRNFRYLDTIKEAVERECPGVVSCADILVLSARDGVVSLGGPYTPLKTGRRDGRKSRADVVENYLPDHNESISTVLSRFKAMGIDTRGVVALLGAHSVGRTHCVKLVHRLYPEVDPTLDPGHVEHMKHKCPDAIPNPKAVQYVRNDRGTPMKLDNNYYVNLMNNKGLLIVDQQLYADSRTRPYVKKMAKSQDYFFKYFARALTILSENNPLTGNRGEIRRQCSLRNKLHTISKR

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
438	12			87	0.992554
933	86		13		0.999973
1129	40			60	1.0
1163		12		87	0.992554

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain