SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4926

Length: 979 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene4926

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15754	7/16
SustainPine v2.0	sp_v2.0_unigene61131	9/16

Source	Descriptions	Term	Type	Identity
AutoFact	Ethylene-forming enzyme n=1 Tax=Picea glauca RepID=Q40839_PICGL	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	62%
Blast2go	protein srg1	-	-	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	organ senescence	GO:0010260	Biological Process	0.0	64%

Source	InterPros	Term	Type	e value	Identity
Sma3	Isopenicillin N synthase	IPR002283	-	0.0	-
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NW44

Fln msg: Separated hits, possible frame ERROR between 308 and 331, Distance to subject end: 83 aas, your sequence is shorter than subject: 296 - 373

Fln protein: MAAVDANPFVNPKGGKVIPVESVQELVKNHVHPNAAEAVPPRYIRTQEERPTVSLIASSEFSIPVIDMKKLxxxxxxxxxKRKQEMDILSDACQEWGFFQIVNHGIPNTLIDDIKSVAKEFFSLPLEEKLKYAPQAGASQGYGKMFVTADDQTLDWGDLLALALMPNSIKNLALWPTVPTHFRDTVESYAIEIERVAQEVLSLFAENLHLEDADYFKNVFGSEPMNMMRMNFYPPCPRPDLVLGLSPHSDGGGITLLLQDDESVGLHVRKNNRWTSCARPFHTDWLVNSWGLGRGN

Protein Length: 297

Fln nts: ATGGGGAATGCATAAATTCCATGTGGATTAAATAATGAGGGATATCTTGAGATAAGGAGGCTGCTGCACTCGTTCGTTCTTCCTCTGCTATC_-_ATGGCCGCTGTAGACGCAAACCCTTTCGTGAATCCAAAGGGGGGCAAAGTGATCCCCGTGGAGAGTGTGCAGGAGCTTGTCAAAAATCATGTCCACCCAAATGCTGCTGAAGCTGTTCCCCCGCGTTACATCAGAACCCAGGAAGAGAGGCCGACGGTCTCATTAATCGCTTCTTCTGAATTCTCAATCCCTGTTATTGACATGAAGAAGCTGATxxxxxxxxxxxxxxxxxxxxxxxxCAAAAGAAAACAAGAAATGGACATACTTTCCGATGCCTGCCAGGAATGGGGTTTCTTCCAGATTGTGAACCATGGAATTCCTAATACTTTAATAGATGACATAAAATCTGTAGCTAAAGAATTCTTCAGCCTTCCACTAGAAGAAAAGCTGAAATATGCTCCACAAGCAGGAGCCTCCCAGGGTTATGGTAAGATGTTTGTGACAGCTGATGATCAAACTTTGGACTGGGGTGACTTGCTGGCTTTGGCACTCATGCCGAACAGCATTAAGAATCTTGCCCTCTGGCCAACCGTTCCCACACATTTCAGGGATACAGTTGAGAGTTATGCAATTGAGATAGAAAGGGTCGCTCAAGAGGTGTTGAGTTTGTTCGCTGAAAACCTGCATCTGGAGGATGCTGATTATTTCAAGAATGTGTTTGGGTCAGAGCCTATGAATATGATGCGAATGAACTTCTACCCGCCTTGCCCTAGACCAGATCTTGTTCTTGGATTGAGTCCTCACTCAGATGGAGGGGGAATAACTCTGCTCCTGCAGGATGACGAGTCTGTAGGCTTGCATGTCCGGAAGAACAATCGATGGACTTCCTGTGCACGCCCATTCCATACGGACTGGTTAGTAAACAGTTGGGGACTTGGTAGAGGTAATG

Fln Alignment:

Contig4926___AVDANP--FVNPKGGKVIPVESVQELVKNHVHPNAAEAVPPRYIRTQEERPTVSLIASSEFSIPVIDMKKLIxxxxxxxxKRKQEMDILSDACQEWGFFQIVNHGIPNTLIDDIKSVAKEFFSLPLEEKLKYAPQAGASQGYGKMFVTADDQTLDWGDLLALALMPNSIKNLALWPTVPTHFRDTVESYAIEIERVAQEVLSLFAENLHLEDADYFKNVFGSEPMNMMRMNFYPPCPRPDLVLGLSPHSDGGGITLLLQDDESVGLHVRKNNRW
A9NW44_________________ATGAGPDSFVNPKWGKSMQVESVQELALN-VDP---KAVPPRYIRIPEERPTSSLLVSRDSAIPLIDMKKLIxxxxxxxxQRQQEMERLSNACQEWGFFQIVNHGIPHSLLDAIKGVAKEFFNLPLQEKQKCAPQAGDVQGYGKTFVVAEDQTLDWGDLLALALMPNNLKNLALWPTVPTNFRDTVERYAIEVERVAQEVLSLFAENLHLE-AEYFKDKFGSEPTNLMRMNLYPPCPRPDLVLGLSPHSDGGGITLLLQDDQTEGLHVRKNNQW

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
572		20	80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain