SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4908

Length: 686 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene4908 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15521	10/10

Source	Descriptions	Term	Type	Identity
AutoFact	lysophospholipase 2 [Arabidopsis thaliana] gb\|AAG52273.1\|AC019018_10 putative lipase; 20450-21648 [Arabidopsis thaliana] gb\|AAK96768.1\| putative lipase [Arabidopsis thaliana] gb\|AAP42742.1\| At1g52760 [Arabidopsis thaliana] gb\|AEE32849.1\| lysophospholipase	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	protein	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Lysophospholipase.	EC:3.1.1.5	-	0.0	79%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glycerophospholipid metabolism	00564		0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	79%
Blast2go	response to hydrogen peroxide	GO:0042542	Biological Process	79%
Blast2go	response to zinc ion	GO:0010043	Biological Process	79%
Blast2go	lysophospholipase activity	GO:0004622	Molecular Function	79%
Blast2go	plasma membrane	GO:0005886	Cellular Component	79%

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	C %	G %	T %	Probability
510	60		40	1.0
684	33	66		0.997452
685	33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain