SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4907

Length: 1520 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene4907

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3541	9/9

Source	Descriptions	Term	Type	Identity
AutoFact	putative dehydratase/deaminase [Oryza sativa Japonica Group]	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	threonine dehydratase chloroplastic-like	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Threonine ammonia-lyase.	EC:4.3.1.19	-	0.0	84%

Source	KEGGs	Term	Identity
Blast2go	Glycine, serine and threonine metabolism	00260	84%
Blast2go	Valine, leucine and isoleucine biosynthesis	00290	84%
Blast2go	Metabolic pathways	01100	84%
Blast2go	Biosynthesis of secondary metabolites	01110	84%

Source	GOs	Term	Type	Identity
Blast2go	threonine metabolic process	GO:0006566	Biological Process	84%
Blast2go	isoleucine biosynthetic process	GO:0009097	Biological Process	84%
Blast2go	pyridoxal phosphate binding	GO:0030170	Molecular Function	84%
Blast2go	L-threonine ammonia-lyase activity	GO:0004794	Molecular Function	84%
Blast2go	chloroplast	GO:0009507	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	Dynamin central domain	IPR000375	-	-
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	-
Sma3	Threonine dehydratase, C-terminal	IPR001721	-	-
Sma3	Pyridoxal phosphate-dependent enzyme, beta subunit	IPR001926	-	-
Sma3	Threonine dehydratase I	IPR005787	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQZ5

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 88 aas, your sequence is shorter than subject: 506 - 652

Fln protein: K*CKPVYNGPCNFSSELESGK*CRGSRTGSNGNLRGRQSFRFEGFWWPRSCS*NNVDIVVEGFLGFIAVRGRVSGRHF*KAAPGSEGPVNVPTAVSYLTRILSSKVYETAIESPLQYAPKLSEKTGVEIWLKREDLQPTFSFKLRGAYNMMAKLPREQLERGVICSSAGNHAQGVALAAQKLFCNAVIAMPVTTPEIKWKSVEQLGATVVLVGDSYDEAQLYAKQRGEEEGLTFIPPFDHPDIISGQGTVGMEIIRQFQGPLHAVFVPVGGGGLIAGIAAYIKRVRPEVRIIGVEPADANSMALSLYHGQRVMLENVGGFADAVAVKVVGEETFRLCRELVDGVILVSRDAICASIKDMFEEKRSILEPAGALALAGANAYCKYYGLKDETVVAITSGANMNFERLRLVTQLADVGAKREAVLATFLQEEHGSFKNFCQLVGPINITEFKYRYDVGKDKALVLYSVGVHKAEELIAMKDRLESSGLKTLDLTDNDLAKDHLRHLMG

Protein Length: 507

Fln nts: AAATGATGCAAACCTGTTTACAACGGGCCATGCAATTTTTCGTCAGAGCTCGAGAGCGGCAAGTAATGCCGTGGTTCGCGGACTGGAAGCAACGGAAATCTCAGAGGACGCCAAAGTTTCAGATTTGAAGGGTTTTGGTGGCCTAGAAGCTGTTCATGAAATAATGTCGACATCGTTGTTGAGGGTTTCCTCGGATTCATTGCAGTACGAGGAAGGGTTTCTGGGCGCCATTTCTGAAAAGCAGCGCCTGGTTCTGAAGGACCAGTTAATGTTCCGACGGCAGTCTCATATTTGACGAGAATTTTATCGTCTAAAGTTTACGAGACCGCCATTGAGTCGCCATTACAGTACGCGCCCAAGCTTTCTGAGAAGACGGGCGTGGAGATTTGGCTCAAACGCGAGGATTTGCAGCCTACTTTTTCATTTAAGTTGCGTGGAGCATACAACATGATGGCCAAGCTACCAAGGGAACAGCTAGAGAGGGGAGTTATTTGCTCTTCTGCTGGTAATCATGCTCAAGGCGTTGCATTGGCAGCTCAAAAACTCTTCTGTAATGCAGTGATAGCAATGCCGGTTACGACCCCTGAAATCAAGTGGAAATCGGTTGAGCAACTTGGTGCAACTGTTGTCCTTGTTGGTGATTCATATGATGAAGCCCAGCTTTATGCTAAGCAACGAGGTGAAGAGGAGGGTCTCACTTTTATACCTCCTTTTGATCATCCAGATATCATTTCAGGCCAGGGAACTGTTGGAATGGAAATTATACGGCAATTTCAAGGTCCGTTACATGCTGTATTTGTACCAGTGGGTGGAGGTGGTCTAATTGCTGGCATTGCTGCTTACATAAAGCGAGTCCGGCCTGAGGTACGGATAATTGGTGTGGAGCCAGCAGATGCAAATTCCATGGCTTTATCTTTGTATCATGGGCAGAGAGTGATGTTGGAGAATGTAGGAGGGTTTGCAGATGCTGTAGCAGTTAAAGTTGTAGGAGAAGAAACATTTCGTCTGTGCAGAGAGTTGGTGGATGGAGTGATTCTTGTCAGTCGTGACGCTATATGTGCATCAATAAAGGACATGTTTGAGGAAAAGAGAAGTATCTTAGAACCTGCTGGTGCACTGGCCTTAGCAGGAGCAAATGCATATTGCAAATATTATGGATTAAAGGATGAAACTGTAGTAGCTATAACCAGTGGTGCAAATATGAACTTTGAACGCCTGAGGCTGGTAACTCAACTTGCTGATGTGGGTGCCAAAAGGGAGGCTGTTCTTGCAACATTTCTTCAAGAGGAGCATGGTTCTTTCAAAAACTTTTGCCAACTGGTGGGGCCCATTAATATAACAGAATTCAAATATCGGTATGATGTTGGTAAAGACAAAGCGCTTGTTTTATATAGTGTTGGTGTTCACAAGGCTGAGGAGCTGATAGCAATGAAGGATCGCCTGGAATCTTCTGGTCTGAAGACATTAGATCTGACAGACAATGACTTGGCTAAAGATCATCTGCGGCATCTAATGGGTGG

Fln Alignment:

Contig4907___GFLGFIAVRGRVSGRHF*KAAPGSEGPVNVPTAVSYLTRILSSKVYETAIESPLQYAPKLSEKTGVEIWLKREDLQPTFSFKLRGAYNMMAKLPREQLERGVICSSAGNHAQGVALAAQKLFCNAVIAMPVTTPEIKWKSVEQLGATVVLVGDSYDEAQLYAKQRGEEEGLTFIPPFDHPDIISGQGTVGMEIIRQFQGPLHAVFVPVXXXXXXXXXXXXXKRVRPEVRIIGVEPADANSMALSLYHGQRVMLENVGGFADAVAVKVVGEETFRLCRELVDGVILVSRDAICASIKDMFEEKRSILEPXXXXXXXXXXXYCKYYGLKDETVVAITSGANMNFERLRLVTQLADVGAKREAVLATFLQEEHGSFKNFCQLVGPINITEFKYRYDVGKDKALVLYSVGVHKAEELIAMKDRLESSGLKTLDLTDNDLAKDHLRHLMG
B8LQZ5_________________GYLG--AISDKTSDPH--SDTNGNGGPTNV----SYLTSILSSKVYEVAIESPLQYAPKISQRSGVRILLKREDLQPVFSFKLRGAYNMMAKLPKEQLEKGVICSSAGNHAQGVALAAERLKCNAVIVMPVTTPEIKWKSVERLGATVVLIGDSYDEAQTYAKRRSEEEGRIFIPPFDHPDVIIGQGTIGMEIVHQNPGPLHAVFVPVGGGGLIAGIAAYMKQVRPEVRIIGVEPADANAMALSLYRGQRVMLDQVGGFADGVAVKVVGEETFRLCRELVDGIVLVSRDAICASIKDMFEEKRSILEPAGALALAGANAYCKYYGLKDETVVAITSGANMNFERLRLVTQLADVGAKREAVLATFLQEEHGSFKNFCQLVGPINITEFKYRYDIGKDKALVLYSVGVHKAEELIAMKDRLESSGLRTLDLTDNDLAKDHLRHLMG

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
785	20		80		0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain