SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4904

Length: 1096 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene4904

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15271	15/15

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Auxin-responsive protein IAA7 n=1 Tax=Picea abies RepID=B2KZF8_PICAB	-	-	3.00004e-41	42%
FL-Next	sp=Auxin-responsive protein IAA16; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	53%
Blast2go	auxin-responsive protein	-	-	0.0	60%

Source	InterPros	Term	Type	Identity
Sma3	Nitrogen regulatory protein P-II, urydylation site	IPR002332	-	-
Sma3	AUX/IAA protein	IPR003311	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Aux/IAA-ARF-dimerisation	IPR011525	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: O24407

Fln msg: your sequence is longer than subject: 287 - 236

Fln protein: MYPWANAVQVPNTWQVSLEQQQQQHRGSFGAFPTQAAARVMVGNVKAAAAGSITLNEAPHGIPSESRAKSSQDSVSASAMRPPMPPPAPSERQQKNPTGNEALTPPSNGNGNSAASRVAPVVGWPPIRSFRKNLAPQPKPDIEDPTDASGNSYASTDPGQTFGDSMFVKVNMDGVPIGRKIDLKAYDSYDKLSQALEEMFKRFINVQGSGQRQPTNPSSKNDQPTLLSGTDYVLTYEDNEGDRMLVGDVPWDMFVSTVKRLRIMKSSEARGLAPRHPLKPQGQVTQ*

Protein Length: 288

Fln nts: AATGCCAAAAGTGAAGTGGACTCCAAGGTTTCAAGCCAACAACCTCAACATCAGAATCAGCATCATCATCAGCATCAGCCCCCCCTTCCTCTC_-_ATGTATCCCTGGGCTAATGCTGTGCAAGTGCCCAACACTTGGCAGGTGAGCCTAGAGCAGCAACAACAGCAGCACAGAGGGAGTTTTGGGGCATTTCCTACTCAGGCAGCAGCCAGAGTTATGGTGGGCAACGTGAAGGCAGCAGCGGCAGGGAGTATTACCCTCAACGAGGCTCCACATGGAATCCCATCCGAATCTCGTGCAAAATCTTCGCAGGACAGCGTCTCAGCTTCAGCCATGAGGCCACCAATGCCACCTCCTGCCCCCTCTGAGCGGCAGCAGAAGAATCCCACTGGCAACGAAGCTCTAACTCCTCCATCTAACGGCAACGGCAACTCTGCTGCATCAAGAGTTGCCCCAGTCGTAGGATGGCCTCCCATTCGGTCATTCAGGAAGAATTTGGCACCTCAGCCCAAGCCTGATATTGAAGACCCAACTGATGCTTCTGGTAACTCTTATGCTTCTACCGATCCTGGACAGACCTTCGGAGATTCCATGTTTGTGAAGGTGAACATGGATGGTGTGCCCATTGGGAGAAAGATCGATCTCAAAGCCTATGATAGCTACGATAAATTGTCCCAAGCTCTTGAAGAAATGTTCAAACGCTTCATCAATGTGCAGGGCAGTGGGCAGAGACAACCTACCAATCCATCGTCTAAAAATGATCAGCCTACTCTATTAAGTGGAACCGATTATGTTCTCACTTATGAAGATAATGAAGGGGATCGTATGCTGGTTGGAGACGTACCTTGGGACATGTTTGTGAGTACAGTGAAGAGGCTGCGTATCATGAAGAGCTCAGAAGCACGGGGATTAGCACCGAGGCATCCTCTGAAGCCACAGGGTCAAGTGACCCAGTGA___CTAATGATTGAAAGCTCCAGTAAAGGGATCCCAAATGGAGGAGATCCCATTAGCAGCAGTGAAGGTTGGGGTGGTTTAAAGTGTGCGGGAAGGTAGGCAAGTCTTCATCAGGAATTGAAGAATTTTTTCTTGATGGTGGGGT

Fln Alignment:

Contig4904___APVVGWPPIRSFRKNLAPQPKPDIEDPTDASGNSYASTDPGQTFGDSM-----FVKVNMDGVPIGRKIDLKAYDSYDKLSQALEEMFKRFI--NVQGSGQRQPTNPSSKNDQPTLLSGTDYVLTYEDNEGDRMLVGDVPWDMFVSTVKRLRIMKSSEARGLAPR
O24407_________________AQVVGWPPVRSFRKNVMSGQKPTTGDATE--GNDKTSGSSGATSSASACATVAYVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIGNYGPQGMKDFMNESKLID---LLNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIMKGSEAIGLAPR

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
427		66		33	0.997452
831		75	25		0.996473
832			25	75	0.996473
836		25		75	0.996473
853	75		25		0.996473
1062		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain