SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4881

Length: 423 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene4881
AAGTCGTTTGATTAGAAAGCAGACTTCTTTTTAAATCCCATTAACATGATCCAAGTGGAGATATTGCGTCGTCTGCGAAGAGATGTGAATAACCCCAAACTTCGTGATGCATTGCTTATCACCATCAATGGTATAGCTGCAGGCATGAGGAACACTGGCTGAGCAGCTTGTTTAGGGATGCCACTGTTTAATGATTCAAATGAGTATGCATGTATGCATGTGTGCATCCCACGTCGGAATATACCCTATTCAGATTGATATTTGTATAAGGTACAGAAAGCAAGCAGTGTGGTGTGACATTTCTTCAAGCAAGCGCATTGGACTGATACTGGTAGGCTGAGTTTAAGACGGAATGGAAGATTGGTCAATAAAATTTGTGCTGGGCAGAAACTAAAAGAAAAGTGTGTACTTTTCTTTGCTGAA

Ace file of the UniGene biog2_v2.0_unigene4881 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6313	10/10

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Phosphoenolpyruvate carboxylase n=1 Tax=Glycine max RepID=Q6Q2Z9_SOYBN	-	-	0.0	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%

Source	InterPros	Term	Type	Identity
Sma3		IPR001449	-	-
Sma3	Pyruvate/Phosphoenolpyruvate kinase	IPR015813	-	-
Sma3	Phosphoenolpyruvate carboxylase, active site	IPR018129	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQ37

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 54 - 1073

Fln protein: KSFD*KADFFLNPINMIQVEILRRLRRDVNNPKLRDALLITINGIAAGMRNTG*

Protein Length: 55

Fln nts: AAGTCGTTTGATTAGAAAGCAGACTTCTTTTTAAATCCCATTAACATGATCCAAGTGGAGATATTGCGTCGTCTGCGAAGAGATGTGAATAACCCCAAACTTCGTGATGCATTGCTTATCACCATCAATGGTATAGCTGCAGGCATGAGGAACACTGGCTGA___GCAGCTTGTTTAGGGATGCCACTGTTTAATGATTCAAATGAGTATGCATGTATGCATGTGTGCATCCCACGTCGGAATATACCCTATTCAGATTGATATTTGTATAAGGTACAGAAAGCAAGCAGTGTGGTGTGACATTTCTTCAAGCAAGCGCATTGGACTGATACTGGTAGGCTGAGTTTAAGACGGAATGGAAGATTGGTCAATAAAATTTGTGCTGGGCAGAAACTAAAAGAAAAGTGTGTACTTTTCTTTGCTGAA

Fln Alignment:

Contig4881___FLNPINMIQVEILRRLRRDVNNPKLRDALLITINGIAAGMRNTG
C0PQ37_________________FLNPINMIQVEILRRLRRDVNNPKLRDALLITINGIAAGMRNTG

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
191	85	14			0.993533
193		14	71		0.984337
228			16	16	0.988813
229	16		83		0.994512
251	14	85			0.993533
252			14	85	0.993533
278		16		83	0.994512
291		20		80	0.995493
352	80	20			0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain