SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4867

Length: 751 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene4867 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1025	13/13

Source	Descriptions	Term	Type	Identity
AutoFact	protein ZEU1 (ZEUS1) [Arabidopsis thaliana] gb\|AED97190.1\| protein ZEU1 (ZEUS1) [Arabidopsis thaliana]	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	thymidylate kinase	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	dTMP kinase.	EC:2.7.4.9	-	0.0	78%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Pyrimidine metabolism	00240		0.0	78%
Blast2go	Metabolic pathways	01100		0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	dTDP biosynthetic process	GO:0006233	Biological Process	78%
Blast2go	dTTP biosynthetic process	GO:0006235	Biological Process	78%
Blast2go	phosphorylation	GO:0016310	Biological Process	78%
Blast2go	ATP binding	GO:0005524	Molecular Function	78%
Blast2go	thymidylate kinase activity	GO:0004798	Molecular Function	78%
Blast2go	mitochondrion	GO:0005739	Cellular Component	78%
Blast2go	nucleoplasm	GO:0005654	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Thymidylate kinase	IPR018094	-	-
Sma3		IPR000062	-	-
Sma3	Thymidylate kinase, conserved site	IPR018095	-	-

Full-Lengther Next Prediction

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
603	66		33		0.997452
637		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain