SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4860

Length: 740 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene4860 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7972	11/11

Source	Descriptions	Term	Type	Identity
AutoFact	Methylthioribose kinase, putative n=1 Tax=Ricinus communis RepID=B9RY82_RICCO	-	-	71%
FL-Next	sp=Methylthioribose kinase; Arabidopsis thaliana (Mouse-ear cress).	-	-	68%
Blast2go	methylthioribose kinase	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:2.7.1.10-	-	0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	cellular response to ethylene stimulus	GO:0071369	Biological Process	83%
Blast2go	phosphorylation	GO:0016310	Biological Process	83%
Blast2go	L-methionine salvage from methylthioadenosine	GO:0019509	Biological Process	83%
Blast2go	cellular response to iron ion	GO:0071281	Biological Process	83%
Blast2go	cellular response to nitric oxide	GO:0071732	Biological Process	83%
Blast2go	identical protein binding	GO:0042802	Molecular Function	83%
Blast2go	S-methyl-5-thioribose kinase activity	GO:0046522	Molecular Function	83%

Source	InterPros	Term	Type	Identity
Sma3	Initiation factor 2B-related	IPR000649	-	-
Sma3	Aminoglycoside phosphotransferase	IPR002575	-	-
Sma3	Putative translation initiation factor, aIF-2BI/5-methylthioribose-1-phosphate isomerase	IPR005251	-	-
Sma3	Methylthioribose kinase	IPR009212	-	-
Sma3	Initiation factor 2B alpha/beta/delta	IPR011559	-	-

Full-Lengther Next Prediction

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
556	20		80		0.995493
718	66	33			0.997452
719		33	66		0.997452
720	66	33			0.997452
722		33	33	33	0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain