SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4855

Length: 1241 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene4855

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17663	18/18

Source	Descriptions	Term	Type	Identity
AutoFact	S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gb\|AAL86352.1\| unknown protein [Arabidopsis thaliana] gb\|AAM67532.1\| unknown protein [Arabidopsis thaliana] gb\|AEE80126.1\| S-adenosyl-L-methionine-dependent methyltran	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	59%
Blast2go	protein	-	-	74%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-
Sma3	Methyltransferase type 11	IPR013216	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADX5

Fln msg: your sequence is longer than subject: 302 - 237

Fln protein: MGDSVVGRSPSASSSSSRGDEYLLQGFSGKFKVRALDPWPWIRVQGSVSGNSSITTTMNGKNGYAVRDTCLFNTYNYGDVGYWDNRYLQEVGPFDWYQRYSELRPYINKHIPKTSRILMVGCGNAVMSEDMVRDGYREIVNIDISSVAIGMMQKKYEHIPQLKYIHMDARSMSCFSNELFDSVIDKGTLDSLMCGASAPLSAASMLEEVSRVLKPGGVYMLITYGDPRLRVPHLNLPHYNWTVTLYIIPRPGFETSGTSSVKSYLEPVPLTEDGMLPPNFILEDPDSHYIYVCKKLLKIEF*

Protein Length: 303

Fln nts: _-_ATGGGGGATAGTGTTGTTGGACGTTCGCCCTCAGCTTCTTCTTCCTCCTCTCGAGGGGATGAATATCTGCTCCAAGGGTTTAGTGGGAAGTTCAAAGTTCGAGCCCTGGATCCTTGGCCGTGGATTCGTGTGCAAGGTTCAGTTTCAGGTAACAGCAGCATAACAACGACAATGAATGGAAAGAATGGTTATGCGGTCAGAGACACTTGTCTGTTTAACACTTACAACTATGGAGACGTTGGCTATTGGGATAACAGATACCTTCAAGAAGTTGGGCCTTTTGATTGGTACCAGCGTTACTCCGAACTCAGACCTTACATAAATAAACACATTCCTAAAACCTCCCGTATTCTTATGGTTGGTTGCGGAAATGCAGTTATGTCGGAAGATATGGTGAGAGATGGATATCGAGAAATTGTGAACATTGATATCTCTTCTGTCGCAATAGGTATGATGCAAAAGAAGTATGAACATATACCTCAACTGAAATATATCCACATGGATGCCCGTAGTATGAGCTGTTTCTCTAATGAATTATTTGATTCAGTAATAGACAAAGGCACCCTCGATTCTCTTATGTGTGGAGCAAGTGCACCATTAAGTGCAGCAAGCATGTTAGAGGAAGTGAGCAGGGTGCTCAAGCCTGGAGGGGTTTATATGCTGATTACATATGGTGATCCTCGTTTGAGAGTGCCTCACTTGAACCTGCCTCACTACAATTGGACCGTTACTTTATACATTATCCCTAGGCCAGGCTTTGAAACATCGGGGACAAGTTCTGTTAAGTCTTATTTGGAACCTGTTCCACTGACGGAGGATGGTATGCTTCCACCAAATTTTATATTGGAAGATCCTGATTCTCACTATATCTATGTTTGTAAAAAACTTCTGAAGATAGAATTTTAA___TCATCTAATATCATGAGAGTGAGTTGTGTATCATTAAACTATACATATCCTGATTGAACATTGATAGTGGAATCATCTTTACCTGATCTTTAAAACCTATCTACAGGAAACATTACCTTTTTAAGATGAATTGCTTGATTTTGATTCTCTACCTAAATTCATTCTTCATGTAGGTCAGGTAGGAGAGAATCTGTTTGTTGCTATTAGTAATATGGGTGATCCCTGTAGTATATTATTTGATTATTCCTGAATCTCTAGGTTGAGAGACTATCATCATATTGGAAAGTGCTTTGTGCATGGAAATTCGTGCCATGAAGAAAATCTGATAGTCATGC

Fln Alignment:

Contig4855___YGDVGYWDNRYLQEVGPFDWYQRYSELRPYINKHIPKTSRILMVGCGNAVMSEDMVRDGYREIVNIDISSVAIGMMQKKYEHIPQLKYIHMDARSMSCFSNELFDSVIDKGTLDSLMCGASAPLSAASMLEEVSRVLKPGGVYMLITYGDPRLRVPHLNLPHYNWTVTLYIIPRPGFETSGTSSVKSYLEPVPLTEDGMLPPNFILEDPDSHYIYVC
D5ADX5_________________YGDASYWDNRYRQDNGPFDWYQQYSGLAPLFHLYIPKRHRILMVGCGNAVLSEDMVNDGYQEIVNVDISSVVIEAMQRKYQDYPQLKYEKMDVRDMSAFENNSFDSVVDKGMLDSLMCGSNAQQNVGKMLEEVRRVLKPRGVYILITYGGPHVRMPHLKAPE-SWTTTLHVVAKPGSRRALETPSWVVTDPIPMNDDGSLGPDFHCEDPDLHYVYVC

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
397			50	50	1.0
401		20	80		0.995493
510	16	83			0.994512
511		83		16	0.994512
513			16	83	0.994512
514	83		16		0.994512
851	66		33		0.997452
916	83			16	0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain