SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4853

Length: 277 nt

UniGene Fasta

>biog2_v2.0_unigene4853
TGTTGCAGCTCTAGCTTTGGGAGCACAAGGTGTTTGCCTTGGAACTAGATTTGTGGCCACAAAGGAAAGCAGTGCTCATCCATTCTACAAACATAAATTGGTTGAGGCATCTAACACTGAATACACTGACATATTTGGTCGTGCAAGATGGCCTGTAGCACACCGTGTCCTTGTAACAAACTTTTTCAACAGTTGGAAGTGTCTTCCTGCTAACGTGAATGAGGCTCAACAACCAACTATCGGTCACACAAAGATATAAAAGGAGCAAGAAGTTAAA

Ace file of the UniGene biog2_v2.0_unigene4853

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1603	6/7

Source	Descriptions	Term	Type	Identity
AutoFact	Aldolase-type TIM barrel family protein [Arabidopsis thaliana] gb\|AAK44141.1\|AF370326_1 putative 2-nitropropane dioxygenase [Arabidopsis thaliana] dbj\|BAB09856.1\| 2-nitropropane dioxygenase-like protein [Arabidopsis thaliana] gb\|AAL34288.1\| putative 2-nit	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	2-nitropropane dioxygenase family	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Nitronate monooxygenase.	EC:1.13.12.16	-	0.0	80%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Nitrogen metabolism	00910		0.0	80%
Blast2go	Oxidoreductases, Acting on single donors with incorporation of molecular oxygen, With incorporation of two atoms of oxygen.	EC:1.13.11.-	-	0.0	80%

Source	KEGGs	Term	Identity
Blast2go	Benzoate degradation	00362	80%
Blast2go	Tryptophan metabolism	00380	80%
Blast2go	Arachidonic acid metabolism	00590	80%
Blast2go	Xylene degradation	00622	80%
Blast2go	Toluene degradation	00623	80%
Blast2go	Polycyclic aromatic hydrocarbon degradation	00624	80%
Blast2go	Naphthalene degradation	00626	80%
Blast2go	Aminobenzoate degradation	00627	80%
Blast2go	Nitrotoluene degradation	00633	80%
Blast2go	Betalain biosynthesis	00965	80%
Blast2go	Metabolic pathways	01100	80%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	80%
Blast2go	response to symbiotic fungus	GO:0009610	Biological Process	80%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	80%
Blast2go	nitronate monooxygenase activity	GO:0018580	Molecular Function	80%
Blast2go	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	GO:0016702	Molecular Function	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	2-nitropropane dioxygenase, NPD	IPR004136	-	0.0	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWS0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 55 aas, your sequence is shorter than subject: 86 - 331

Fln protein: VAALALGAQGVCLGTRFVATKESSAHPFYKHKLVEASNTEYTDIFGRARWPVAHRVLVTNFFNSWKCLPANVNEAQQPTIGHTKI*

Protein Length: 87

Fln nts: TGTTGCAGCTCTAGCTTTGGGAGCACAAGGTGTTTGCCTTGGAACTAGATTTGTGGCCACAAAGGAAAGCAGTGCTCATCCATTCTACAAACATAAATTGGTTGAGGCATCTAACACTGAATACACTGACATATTTGGTCGTGCAAGATGGCCTGTAGCACACCGTGTCCTTGTAACAAACTTTTTCAACAGTTGGAAGTGTCTTCCTGCTAACGTGAATGAGGCTCAACAACCAACTATCGGTCACACAAAGATATAAAAGGAGCAAGAAGTTAAA

Fln Alignment:

Contig4853___VAALALGAQGVCLGTRFVATKESSAHPFYKHKLVEASNTEYTDIFGRARWP-VAHRVLVTNFFNSWKCLPANVNEAQQPTIGHTKI-*KEQEVK
A9NWS0_________________VAALALGAQGVCLGTRFVATKESNAHPFYKQKLVEASNTEYTDIFGRARWPGAAQRVLVTNFFNIWKHLPTDVNEDQQPTIGHTKIYEKDQEVK

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
209		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain