SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4819

Length: 511 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene4819
ATGGGCAAGGCAACGGTATATATAATTATTCGATGTAAAGAGTGCATGATTTTGGTAGCTTGGAAGGATAGACCAAAATCGAAGCATAGATTTTCGGTGATGAATATGATGAAGCGGGAAATTTCTACTATGAAGCTGATCAAGCATCCAAATGTCATACGGTTACATGAGGTCATGGCTAGTTAAACAAAGATCTATATTGTACTTGAGTTTGTAGCTGGAGGAGAGCTTTTTGATAAAATTGTTAGAAGTGGGAGATTGAGGGAAGATGAAGCAAGAAGATACTTCCAGCAACTCATCAATGCTGTGGACTACTGCCATAGTAGGGGTGTGTTCCATAGAGACTTGAAGCCAGAAAATATGCTTCTAGATGCACATGGGAATCTCAAAGTTTCTGATTTTGGCTTAAGTGCCCTGCCTAAGCAAATCAGGGAGGATGGACTACTTCACACTACTTGTGGAACACCCAATTATGTCGCTCCTGAGGTAATTCATGATAAAGGTTACAATG

Ace file of the UniGene biog2_v2.0_unigene4819 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene24833	1/5
SustainPine v2.0	sp_v2.0_unigene28512	3/5

Source	Descriptions	Term	Type	Identity
AutoFact	CBL-interacting protein kinase 04 n=3 Tax=Vitis vinifera RepID=A5BQ82_VITVI	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	cbl-interacting serine threonine-protein	-	-	87%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	NAF domain	IPR004041	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	NAF/FISL domain	IPR018451	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PT62

Fln msg: Distance to subject end: 91 aas, your sequence is shorter than subject: 170 - 288

Fln protein: MGKATVYIIIRCKECMILVAWKDRPKSKHRFSVMNMMKREISTMKLIKHPNVIRLHEVMAS*TKIYIVLEFVAGGELFDKIVRSGRLREDEARRYFQQLINAVDYCHSRGVFHRDLKPENMLLDAHGNLKVSDFGLSALPKQIREDGLLHTTCGTPNYVAPEVIHDKGYN

Protein Length: 171

Fln nts: ATGGGCAAGGCAACGGTATATATAATTATTCGATGTAAAGAGTGCATGATTTTGGTAGCTTGGAAGGATAGACCAAAATCGAAGCATAGATTTTCGGTGATGAATATGATGAAGCGGGAAATTTCTACTATGAAGCTGATCAAGCATCCAAATGTCATACGGTTACATGAGGTCATGGCTAGTTAAACAAAGATCTATATTGTACTTGAGTTTGTAGCTGGAGGAGAGCTTTTTGATAAAATTGTTAGAAGTGGGAGATTGAGGGAAGATGAAGCAAGAAGATACTTCCAGCAACTCATCAATGCTGTGGACTACTGCCATAGTAGGGGTGTGTTCCATAGAGACTTGAAGCCAGAAAATATGCTTCTAGATGCACATGGGAATCTCAAAGTTTCTGATTTTGGCTTAAGTGCCCTGCCTAAGCAAATCAGGGAGGATGGACTACTTCACACTACTTGTGGAACACCCAATTATGTCGCTCCTGAGGTAATTCATGATAAAGGTTACAATG

Fln Alignment:

Contig4819___KHRFSVMNMMKREISTMKLIKHPNVIRLHEVMAS*TKIYIVLEFVAGGELFDKIVRSGRLREDEARRYFQQLINAVDYCHSRGVFHRDLKPENMLLDAHGNLKVSDFGLSALPKQIREDGLLHTTCGTPNYVAPEVIHDKGYN
C0PT62_________________KHK--MVEQIKREISTMKLIKHPNVIRLHEVMASKTKIYIVLDFVNGGELFDKIVNHGRLREDEARRYFQQLINAVDYCHSRGVSHRDLKPENLLLDAYGNLKVSDFGLSALPQQIMEDGLLHTTCGTPNYVAPEVINDKGYD

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
295		25		75	0.996473
330	50			50	1.0
331	50	50			1.0
332		50		25	0.995533
378	33		66		0.997452
385	66		33		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain