SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4773

Length: 1612 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene4773 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3597	5/33
SustainPine v2.0	sp_v2.0_unigene6558	24/33
SustainPine v2.0	sp_v2.0_unigene14360	1/33
SustainPine v2.0	sp_v2.0_unigene31023	1/33
SustainPine v2.0	sp_v2.0_unigene80601	1/33
SustainPine v2.0	sp_v2.0_unigene81035	1/33

Source	Descriptions	Term	Type	Identity
AutoFact	U2 snrnp auxiliary factor, small subunit, putative n=1 Tax=Ricinus communis RepID=B9SRG2_RICCO	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	u2 snrnp auxiliary small	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	photoperiodism, flowering	GO:0048573	Biological Process	92%
Blast2go	RNA binding	GO:0003723	Molecular Function	92%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	92%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	92%
Blast2go	nucleus	GO:0005634	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	U2 auxiliary factor small subunit	IPR009145	-	-
Sma3	Zinc finger, CCCH-type	IPR000571	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABW9

Fln msg:

Fln protein: MAEHLASIFGTEKDRVNCPFYFKIGVCRHGDRCSRLHTRPSISPTLLLSNMYQRPDMITPGMDPQGHALDPRKIQEHFEDFYEDLFEELGKYGAIESLNVCDNLADHMVGNVYVQFREEEHAAAALQALTGRFYAERAIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKKISRELRRQLFGRYRQYGHGYSRSQSRSPSPRLSVERHRGYDDRPRGGRGYDDRPYGGRGYDNRSHGGRGFGRRNGRGYPSYHDDRHGRRPRSRSPGYRRGRSRSRSHSPRRSRNFVREGSAERRAKIEQWNKEREQAAASSTANQSIQNGGVYSDQPDDGF*

Protein Length: 338

Fln nts: CGCTGGAGGTTACACAGTACGAAGTTTGAGTCCACAGGTGTGAAGCCGCCGCTCACTCCACAAGTTGGAAGGAATTCCAACTGTAATCGGCTCCATCACAGGTTGTGGAAGTGCTGATAATCTGTGAAAGTCTGAATCTAGTAGCTATTTGAAGCC_-_ATGGCAGAACATTTAGCTTCAATCTTTGGTACTGAGAAAGATAGAGTAAATTGCCCTTTCTACTTCAAAATTGGGGTTTGCAGGCATGGGGATCGCTGTTCACGACTTCACACAAGGCCTAGTATCAGCCCTACACTTCTTCTATCTAACATGTATCAAAGGCCAGATATGATTACTCCAGGGATGGATCCTCAAGGTCATGCTCTGGACCCTCGAAAGATCCAGGAACACTTTGAGGATTTCTATGAAGATTTATTTGAAGAGCTCGGCAAGTATGGAGCAATAGAAAGCTTGAATGTTTGTGACAACTTGGCTGATCATATGGTTGGCAATGTTTATGTACAGTTCAGGGAGGAAGAACATGCTGCTGCTGCATTGCAGGCTTTGACTGGTAGATTTTATGCTGAGCGAGCAATCATAGTGGATTTCTCTCCTGTTACTGACTTCCGCGAAGCAACATGTAGGCAATATGAAGAGAATACTTGCAACCGTGGTGGCTACTGTAACTTTATGCACCTCAAGAAGATCAGCAGAGAGCTGAGGCGGCAATTATTTGGAAGGTATAGACAATATGGCCATGGTTACAGTAGAAGCCAGAGTCGAAGTCCTAGCCCTCGACTGTCTGTAGAAAGACACCGTGGTTATGATGATCGTCCTCGTGGTGGCCGTGGTTATGATGACCGTCCCTATGGTGGTCGTGGCTATGATAACCGTTCCCATGGTGGTCGTGGTTTTGGCAGGAGAAATGGGAGGGGTTATCCTAGTTATCATGATGATAGACATGGACGAAGGCCACGGAGCCGCAGTCCAGGTTACAGACGAGGTCGGAGCAGGAGCAGGAGCCACAGCCCTAGGAGGAGCAGAAATTTTGTGAGAGAAGGCAGTGCTGAGAGGAGAGCTAAAATTGAACAGTGGAATAAAGAAAGAGAACAAGCAGCAGCATCTTCCACTGCGAACCAGTCCATCCAAAATGGAGGGGTGTATTCGGATCAACCTGACGACGGCTTTTAG___CTTATGGATGATTACTGCATTTTTGGTGCATGTGCTGCTGCTTCAATGTTACTGGTGTATGGAGTTTTCGAAATTTCTGGAGATGCTAAAGCTGTTTGTGCAGGAAGAAAATTATGGAGACTGCAATGGTCTCCATTATGCAGGGAGAAAGGAAGGCTACATGACTCTGTTTCAGGTTCATCTTGTGCAGGCACAGGTCTTTTGTCTAAAAAATTAGAGCTATATTATTTGTGCGGGCACTCTGGATTTTGAACCGTGGTTCTTTATAAAAGGTGTTTTGCAGGTACATGGTTTAAAATGGTTCTAGATTTGATGGTAACAGATCTAACAGTATTCATTGGCTGGATTCTCTATATTTGGAATTTAAGTACCTGTATTCTTCAGGATTTATTTTGATACAGAATTGAATGGTAACGGATCTAACAGTATGCAGTGGTTGGATTCT

Fln Alignment:

Contig4773___MAEHLASIFGTEKDRVNCPFYFKIGVCRHGDRCSRLHTRPSISPTLLLSNMYQRPDMITPGMDPQGHALDPRKIQXXXXXXXXXXXXXLGKYGAIESLNVCDNLADHMVGNVYVQFREEEHXXXXXXXLTGRFYAERAIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKKISRELRRQLFGRYRQYGHGYXXXXXXXXXXXXSVERHXXXXXXXXXXXXXXXXXXXXXXXDNRSHXXXXXXXXXXXGYPSYHDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNFVREGSAERRAKIEQWNKEREQAAASSTANQSIQNGGVYSDQPDDGF
D5ABW9_________________MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTRPSISPTILLSNMYQRPDMITPGMDPQGHALDPQKIQEHFEDFYEDLFEELGKYGEIESLNVCDNLADHMVGNVYVQFREEEHAAAALQALTGRFYAGRAIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKKISRELRRQLFGRYRRYGHGYSRSRSRSLSPGLSVERHRGYDDRPRGGRGYDDRPYGGRGYDDRPHGGRGFGRKNERDYPGYHDDRHGRRPRSRSPGHRQGRSRSHSPKRNRSP--VREGSAERRAKIEQWNREREQAAASSDANQSMQNGGAHSYQPGYGY

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
7		66		33	0.997452
109	75	25			0.996473
126		25		75	0.996473
435	66		33		1.0
493	33		66		0.997452
518		33		66	0.997452
519		33	66		0.997452
520	33	66			0.997452
1281	66		33		0.997452
1359	75		25		0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
1083	1094	GCA GCA GCA GCA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain