SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4765

Length: 1252 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene4765 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6451	19/19

Source	Descriptions	Term	Type	Identity
AutoFact	Putative auxin response factor 2/1/9 (Fragment) n=1 Tax=Cycas rumphii RepID=E1UHY0_CYCRU	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	69%
Blast2go	auxin response factor 2	-	-	62%

Source	GOs	Term	Type	Identity
Blast2go	fruit dehiscence	GO:0010047	Biological Process	62%
Blast2go	positive regulation of flower development	GO:0009911	Biological Process	62%
Blast2go	negative regulation of cell proliferation	GO:0008285	Biological Process	62%
Blast2go	ovule development	GO:0048481	Biological Process	62%
Blast2go	floral organ abscission	GO:0010227	Biological Process	62%
Blast2go	leaf senescence	GO:0010150	Biological Process	62%
Blast2go	negative regulation of transcription, DNA-dependent	GO:0045892	Biological Process	62%
Blast2go	protein binding	GO:0005515	Molecular Function	62%

Source	InterPros	Term	Type	Identity
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	Smr protein/MutS2 C-terminal	IPR002625	-	-
Sma3	AUX/IAA protein	IPR003311	-	-
Sma3	B3 DNA binding domain	IPR003340	-	-
Sma3	Ribosomal protein S12/S23	IPR006032	-	-
Sma3	Protein of unknown function DUF482	IPR007434	-	-
Sma3	Auxin response factor	IPR010525	-	-
Sma3	Aux/IAA-ARF-dimerisation	IPR011525	-	-
Sma3	Domain of unknown function DUF1771	IPR013899	-	-
Sma3	DNA methylase, N-4 cytosine-specific, conserved site	IPR017985	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PTP3

Fln msg: your sequence is shorter than subject: 162 - 450

Fln protein: KYEPPAVSCDQEKPLQKLSKETQVKQHGNPTRSCTKVHKQGIALGRAVDLTKFEGYEELICELERMFNIEGELRNPSKGWQVVYTDNEGDMMLVGDDPWQEFCSIVRKIFIYTREEVEKMTPQKHAKLQGCSDEQPTTRETSKHSLSELQESTLPAASVDA*

Protein Length: 163

Fln nts: TCAAATATGAGCCACCTGCGGTAAGCTGTGATCAGGAGAAACCTTTGCAAAAGTTATCAAAAGAAACTCAAGTCAAACAGCATGGCAACCCCACCAGGAGCTGTACGAAGGTGCATAAGCAGGGAATAGCTCTTGGAAGGGCTGTTGACCTTACTAAGTTTGAAGGTTACGAGGAATTAATTTGTGAGCTTGAACGCATGTTCAACATTGAAGGAGAACTACGGAATCCTAGCAAAGGTTGGCAGGTTGTGTACACGGATAATGAAGGAGATATGATGCTTGTTGGTGATGATCCATGGCAGGAGTTCTGTAGCATTGTGCGCAAGATTTTCATCTATACTCGAGAAGAGGTTGAGAAAATGACTCCTCAAAAGCATGCCAAACTGCAAGGATGTTCAGATGAGCAACCAACAACCAGAGAAACATCGAAGCATTCTCTCTCCGAGCTTCAGGAATCAACTTTACCTGCAGCCAGTGTAGATGCTTGA___AACCGTCGGCAGATTATCTTCAAGTTTTGCTATACTTGATTGATGATTTCCATGGAGTATGAAGGGCATGATTTAACTAGCTTTTCGTCAGTGGCACTGACAGGACAATTAAAAGGCGTTTGTAAGAATGTATGTGGTGTGCTTGCCTGATCTTGACACACTTGGCCTAAATGCGATTTTTTTCTCAAGTGTTTCAGCCTTGTGATCTGGTCTGGTCATCTTCAAGGAATGTTGTAGTACTGGCTAATCTGGTGCAAATAGTTTGTTGTGATAATGGTTATGCATGACTTTAAATAGAGGAATGTGTTCCAATACCAATTTTGGAGCTCACATTAGCAGCAATACCAACAACTATGATACTGATGTAGATGTTAGGAAAGCCTGTAATTTTTGAGAAAAATCCTTGAGCGTAGACAGAAGATAATTGGGAAAGCATTGTACTTCTGTGTCACTCTGAAATATACAGGCTTGGATGCTAAATGCCAGTCATCTTAAAGCAAGCAAGGGAACCTTGAAATGTTTCATCTGTAACAAGTTAAAACAGGCCAGTGTAAAATACCGCCATCTATTTTCTCTATAGTAGTTGCCATTTCTATTTACCTCGAGGTAACATTGTTCCCTTGTGCCAAGTATGTGAGATAGGTGAGCATTTCAGCAAATTTAATGGTCAATGCTAACCGTCTGACACCAGAGGTTCTTGATTACGAGTGGTTGTATTATCCTCTCTATTTGTAAATAATGATGTGTACTAAATGCAATTGTGC

Fln Alignment:

Contig4765___KYEPPAVSCDQEKPLQKLSKETQVKQHGNPTRSCTKVHKQGIALGRAVDLTKFEGYEELICELERMFNIEGELRNPSKGWQVVYTDNEGDMMLVGDDPWQEFCSIVRKIFIYTREEVEKMTPQ-KHAKLQGCSDEQPTTRETSKHSLSELQESTLPAASVD
C0PTP3_________________KMDMPAAIIDEEKSSQKSSKETHNRPQSNSTRSCTKVHKQGSALGRAVDLTKFEGYTELIRELEQMFNIEGELEDPNKGWQVVYTDNEGDMMLVGDDPWQEFCSIVRKIYIYTREEVEKMTPQTPSAKLKGCS-EDLATKETSR--CSDRQDSSIAGVTAE

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
170		50		50	1.0
205			66	33	0.997452
323	80			20	0.995493
408		12		87	0.992554
414			12	87	0.992554
423	12			87	0.992554
1091		33		66	0.997452
1094	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain