SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4764

Length: 497 nt

UniGene Fasta

>biog2_v2.0_unigene4764
GTTGGTGGATTGAAGACTGCGAATGCATCTGACCATCAAGAAGGTGATAACAAGGGTTCAAATGCTGCCACAACTGGACCAGTACGAAGTATGGGAAGAAAGGTAGGGCCATCATCTCAGATTAAGCCCATCCGTAATATATCTGTGAAAGACGTAGTTGCTTTACTGGAACGAGAACCACAGATGACAAAATCAACTATACTTTATCGTTTGTATGAGAGACAGGCGCAATGTAGTAAAGAAAAAGCATCTGAAAATCAAAATAATGAAAATGTTCTGCAGTAAAAGTGCAGATATAAAATTCTATGCTGACATGATGCATTATAGCACTCTGTGACTGCTGTCACATGTGCAAATCGAATTGTTGGCAAAGCTGCCATCTGAGTCTGAGAAATACACGTTGAAGTGATAGTTATCTGGAATTAACTTAAAACCGTACTTGTCAGGAACTAATACCTTGTACAGCATAGGTTCGAGGTTAATATCTTCAGGTTGGA

Ace file of the UniGene biog2_v2.0_unigene4764

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7539	3/5
SustainPine v2.0	sp_v2.0_unigene62588	2/5

Source	Descriptions	Term	Type	Identity
AutoFact	TBP-associated factor 4 [Arabidopsis thaliana] gb\|AAR21620.1\| TATA-binding protein associated factor 4b [Arabidopsis thaliana] dbj\|BAF01312.1\| hypothetical protein [Arabidopsis thaliana] gb\|AED94913.1\| TBP-associated factor 4 [Arabidopsis thaliana]	-	-	50%
FL-Next	tr=Transcription initiation factor, putative; Ricinus communis (Castor bean).	-	-	57%
Blast2go	transcription initiation	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	cellular macromolecule biosynthetic process	GO:0034645	Biological Process	70%
Blast2go	gene expression	GO:0010467	Biological Process	70%
Blast2go	primary metabolic process	GO:0044238	Biological Process	70%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	70%

Source	InterPros	Term	Type	e value	Identity
Sma3	Transcription initiation factor TFIID component TAF4	IPR007900	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9R722

Fln msg: your sequence is shorter than subject: 95 - 925

Fln protein: VGGLKTANASDHQEGDNKGSNAATTGPVRSMGRKVGPSSQIKPIRNISVKDVVALLEREPQMTKSTILYRLYERQAQCSKEKASENQNNENVLQ*

Protein Length: 96

Fln nts: GTTGGTGGATTGAAGACTGCGAATGCATCTGACCATCAAGAAGGTGATAACAAGGGTTCAAATGCTGCCACAACTGGACCAGTACGAAGTATGGGAAGAAAGGTAGGGCCATCATCTCAGATTAAGCCCATCCGTAATATATCTGTGAAAGACGTAGTTGCTTTACTGGAACGAGAACCACAGATGACAAAATCAACTATACTTTATCGTTTGTATGAGAGACAGGCGCAATGTAGTAAAGAAAAAGCATCTGAAAATCAAAATAATGAAAATGTTCTGCAGTAA___AAGTGCAGATATAAAATTCTATGCTGACATGATGCATTATAGCACTCTGTGACTGCTGTCACATGTGCAAATCGAATTGTTGGCAAAGCTGCCATCTGAGTCTGAGAAATACACGTTGAAGTGATAGTTATCTGGAATTAACTTAAAACCGTACTTGTCAGGAACTAATACCTTGTACAGCATAGGTTCGAGGTTAATATCTTCAGGTTGGA

Fln Alignment:

Contig4764___DHQEGDNKGSNAATTGPVRSMGRKVGPSSQIKPIRNISVKDVVALLEREPQMTKSTILYRLYER
B9R722_________________DNQEPEKRSPAAASTG-VRKVGRNQAFTPQSKVARSISVKDVIAALEREPQMSKSTLIYRLYER

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
153		75		25	0.996473
165	75		25		0.996473
213		25		75	0.996473
268	66			33	0.997452
274	66		33		0.997452
279		66		33	0.997452
311		33		66	0.997452
326	66	33			0.997452
334		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain