SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4759

Length: 1006 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene4759

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6164	13/13

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	72%
Blast2go	protein	-	-	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastid	GO:0009536	Cellular Component	0.0	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P2M8

Fln msg:

Fln protein: MVLPLAPGKFYGGSLPRPWIYGDVKFNSERVDPPPPPSAPLLSWANEAHWSMGGLSSKRKRMQGKIEGSIKKLRAIEEEEEEAEDLAVSGGFEASKSSTARDTIADEGIITSSMETNEKPSEKGSSGARTQANPSETDSSGVRAQANPSEKGSSGIRTLAKKSIQRDPSSDKVQKSDQGTSGFVEASGNVKAAEDNVGIRVSPRNKKRKGESENAGVEPESSKDDKSARRSGRISSPALASSRVCTRSSGSRLVAAM*

Protein Length: 259

Fln nts: ATGGGGACCAAAGGTTTGCCTCTCGGCCGGAGTCACGAGTTCGATTCTGGTTAGGACCGTATTCAGCTGATTGCTGAGTTCCATTTCTGTTGTTCGGAAGTTCTAGTGCTCTGTAGGGTTGATAAG_-_ATGGTTCTACCCCTGGCACCTGGGAAGTTTTATGGAGGCAGTCTTCCAAGGCCATGGATCTACGGTGACGTGAAGTTCAACTCGGAGAGAGTCGATCCCCCGCCCCCTCCCTCGGCCCCGCTTCTGTCATGGGCGAACGAGGCGCACTGGTCTATGGGCGGTCTCTCCTCCAAGAGAAAGCGAATGCAGGGCAAGATTGAAGGAAGCATCAAGAAACTCAGAGCCATTGAAGAGGAGGAGGAGGAAGCCGAAGATCTTGCTGTCTCGGGAGGTTTCGAGGCTTCTAAATCCAGCACCGCCCGTGATACAATTGCTGACGAAGGTATAATTACATCCAGCATGGAAACTAATGAAAAACCTTCTGAAAAAGGCTCTTCGGGTGCTCGAACCCAGGCGAATCCTTCTGAAACAGATTCTTCGGGGGTTCGAGCCCAGGCAAATCCTTCTGAAAAAGGCTCTTCGGGGATTCGAACCCTGGCAAAGAAGTCGATCCAGCGTGATCCTTCTTCTGATAAGGTGCAAAAGAGCGATCAGGGTACTTCAGGGTTTGTTGAGGCTTCTGGCAATGTTAAAGCCGCTGAAGACAATGTGGGTATTAGGGTTTCTCCCAGGAATAAGAAGAGGAAAGGGGAGTCTGAGAACGCAGGAGTCGAACCTGAGTCTAGCAAGGATGATAAATCTGCGAGACGCAGCGGCCGTATTTCATCCCCTGCATTGGCGAGCTCCAGGGTCTGTACAAGGTCATCTGGTTCTCGTTTGGTCGCTGCCATGTGA___CCGACCGCTGGTGTAAATGGGCTTTTCTTGAGGGGATTTTGTTGTGTACCGTAACAGTGGAAAGATAAATATTGATGCTTTTGATTTTATTCTGCGTCTATTATTA

Fln Alignment:

Contig4759___MVLPLAPGKFYGGSLPRPWIYGDVKFNSERVDXXXXXXXXXXXWANEAHWSMGGLSSKRKRMQGKIEGSIKKLRAI-XXXXXXXXDLAVSGGFEASKSSTARDTIADEGIITSSMETNEKPSEKGSSGARTQANPSETDSSGVRAQANPSEKGSSGIRTLAKKSIQRDPSSDKVQKSDQGTSGFVEASGNVKAAEDNVGIRVSPRNKKRKGESENAGVEPESSKDDKSARRSGRISSPALASSRVCTRSSGSRLVAAM
A9P2M8_________________MVLPLAPGKFYGGSLPRPWIYGDVKFNSERIDPPLPPSAPLLSWANEAHWSMGGLSSKRKRMQGKIEGSIKKLRAIAEEEEDEAGDLAVSGGSEASKPSSAHATVAGEGIVRSGLET-EKTPEKGFPGIRTH----------------------------AKKSTRRDPSSDKAQKSDRGSSGFVEASGNANAVEKDEGFRVSPRNKKRKGESEGAGVEPETSKEDTSVRRSGRISSPALASSRVSTRSSGSRSVAAM

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
336		80		20	0.995493
346	80		20		0.995493
375		75		25	0.996473
411		25		75	0.996473
431	40	60			1.0
457	40		60		1.0
527	25	75			0.996473
529			25	75	0.996473
530		75	25		0.996473
531			25	75	0.996473
536	25	75			0.996473
569		75		25	0.996473
588		75		25	0.996473
593	75		25		0.996473
603	16			83	0.994512
623		50	50		1.0
639	50			50	1.0
658		16		83	0.994512
672		40	60		1.0
764	33		66		0.997452
784		33		66	0.997452
788	33			66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
358	371	GAG GAG GAG GAG GA	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain