SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4757

Length: 1576 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene4757

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene26929	38/38

Source	Descriptions	Term	Type	Identity
AutoFact	Farnesyl diphosphate synthase 4 n=2 Tax=Picea RepID=B1A9K8_PICAB	-	-	95%
FL-Next	tr=Farnesyl diphosphate synthase 4; Picea abies (Norway spruce) (Picea excelsa).	-	-	95%
Blast2go	farnesyl diphosphate synthase	-	-	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Polyprenyl synthetase	IPR000092	-	0.0	-
Sma3	Terpenoid synthase	IPR008949	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B1A9K8

Fln msg:

Fln protein: MASNGIVDVRPKFEKIYSELKAQILADPAFDYTEDARQWVDKMLDYTVPGGKLNRGLSVIDSYRLLKAGEEISEDEVFLGCVLGWCIEWLQAYFLILDDIMDGSHTRRGQPCWFRLPKVGLIAVNDGILLRNHICRILKMHFRTKPYYVDLLDLFNEVEFQTASGQLLDLITTHEGATDLSKYKMPTYVRIVQYKTAYYSFYLPVACALLMAGENLDNHVDVKNILVQMGTYFQVQDDYLDCFGDPEVIGKIGTDIEDFKCSWLVVQALERANESQLHRLDANYGKTDPSCVAEVKAVYRDLGIQDVFLEYERTSYKELISSIEAQENESLQLVLKSFLGKIYKRQK*

Protein Length: 349

Fln nts: ATGGGGGAGACAGGAAGGATTCAGGAAATCTCAGGTTTCAGCCGGCACTACATAAATGTGAACCACTCATGATCTATGGGGAAAACAAGGCATTTGATTCTCATTTATTTCTTTCCACGCTTTCCCGAAATTTAGGGTTTGTAAATCC_-_ATGGCTTCTAACGGCATCGTCGACGTGAGACCAAAGTTTGAGAAAATCTATTCTGAGCTTAAAGCTCAGATTCTGGCGGATCCTGCCTTCGACTACACTGAAGACGCCCGTCAATGGGTCGACAAGATGCTGGACTACACTGTGCCCGGAGGAAAGCTGAATCGTGGTCTATCTGTAATAGACAGCTATAGGCTATTGAAAGCAGGAGAGGAAATATCAGAAGATGAAGTCTTTCTTGGATGTGTGCTTGGCTGGTGTATTGAATGGCTTCAAGCATATTTCCTTATATTAGATGACATCATGGATGGCTCCCACACTAGGCGTGGACAACCCTGTTGGTTCAGATTACCTAAGGTTGGCTTAATTGCTGTTAATGATGGAATATTGCTTCGTAACCACATATGCAGAATTCTGAAAATGCATTTTCGCACTAAGCCTTATTATGTGGATCTCCTTGATTTGTTTAACGAGGTTGAATTTCAAACAGCTAGTGGACAGTTGCTGGACCTTATCACTACTCATGAAGGAGCAACAGACCTTTCAAAATACAAAATGCCAACCTATGTTCGTATAGTTCAATACAAGACTGCCTACTATTCGTTCTATCTGCCTGTTGCCTGTGCACTGTTAATGGCAGGTGAAAATTTAGATAACCACGTAGATGTCAAGAATATTTTAGTCCAAATGGGAACCTATTTTCAAGTACAGGATGATTATCTTGATTGCTTTGGTGATCCAGAAGTGATTGGGAAGATTGGGACTGACATCGAAGACTTCAAGTGCTCTTGGTTGGTGGTTCAAGCGCTTGAACGGGCCAACGAGAGCCAACTTCATCGATTAGATGCCAATTATGGGAAAACAGATCCTTCTTGTGTTGCAGAAGTTAAGGCTGTATATAGGGATCTTGGAATTCAGGATGTTTTTTTGGAATATGAGCGTACTAGTTATAAGGAGCTCATTTCTTCCATTGAGGCTCAGGAGAATGAATCTTTGCAGCTCGTGCTGAAGTCTTTCCTAGGAAAGATATACAAGCGACAGAAGTAA___CATTGCAGATCTACAAGGTGTGTCGCAGAATGTTTTAAACGAGCGACCTCAGAAATTCCCTTCTTGATAGCAGTCACATTTGATATCTACGCTGTAAAGTGTTTTAAATAAGAGATCTCAGAAATTCCCTTGATGATAGCAGTCACATTTGATTTCTATGTCCATGTCTAGCATAGTGACATGGTAATGCTACCTGCTGCTTGAACATTTATTTAGAGATCGCTATTGCTATTTAATTCTCTTCAATCAAAAGGGTCATCACAATTCTTTCAGTAGTTAGTCCAACAACTCTGATGGAGTTCATCCTCGGTTACGGCATAGTCATATCTGAAGTCGTACTGTAGGAAAGTGTTTACAACATATGGCACTCCACTTGATTGAATG

Fln Alignment:

Contig4757___MASNGIVDVRPKFEKIYSELKAQILADPAFDYTEDARQWVDKMLDYTVPGGKLNRGLSVIDSYRLLKAGEEISEDEVFLGCVLGWCIEWLQAYFLILDDIMDGSHTRRGQPCWFRLPKVGLIAVNDGILLRNHICRILKMHFRTKPYYVDLLDLFNEVEFQTASGQLLDLITTHEGATDLSKYKMPTYVRIVQYKTAYYSFYLPVACALLMAGENLDNHVDVKNILVQMGTYFQVQDDYLDCFGDPEVIGKIGTDIEDFKCSWLVVQALERANESQLHRLDANYGKTDPSCVAEVKAVYRDLGIQDVFLEYERTSYKELISSIEAQENESLQLVLKSFLGKIYKRQK
B1A9K8_________________MASNGIVDVKTKFEEIYLELKAQILNDPAFDYTEDARQWVEKMLDYTVPGGKLNRGLSVIDSYRLLKAGKEISEDEVFLGCVLGWCIEWLQAYFLILDDIMDSSHTRRGQPCWFRLPKVGLIAVNDGILLRNHICRILKKHFRTKPYYVDLLDLFNEVEFQTASGQLLDLITTHEGATDLSKYKMPTYVRIVQYKTAYYSFYLPVACALVMAGENLDNHVDVKNILVEMGTYFQVQDDYLDCFGDPEVIGKIGTDIEDFKCSWLVVQALERANESQLQRLYANYGKKDPSCVAEVKAVYRDLGLQDVFLEYERTSHKELISSIEAQENESLQLVLKSFLGKIYKRQK

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
463		75		25	0.996473
723		12		87	0.992554
1125	83		16		0.994512
1146		16		83	0.994512
1339	84		15		0.999986
1359		15		84	0.999986
1419		11		88	0.923564
1420	12		87		0.992554
1462		14		85	0.993533
1463		85		14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain