SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4736

Length: 982 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene4736 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3739	9/15
SustainPine v2.0	sp_v2.0_unigene15891	5/15

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cullin 1-like protein C [Petunia integrifolia subsp. inflata]	-	-	0.0	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%

Source	InterPros	Term	Type	Identity
Sma3	Cullin, conserved site	IPR016157	-	-
Sma3	Cullin homology	IPR016158	-	-
Sma3	Cullin, N-terminal	IPR001373	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQB2

Fln msg: Overlapping hits, possible frame ERROR between 751 and 748, Distance to subject end: 493 aas, your sequence is shorter than subject: 251 - 744

Fln protein: MTMSERKIIELESGWEFMQKGITKLESILEGIPEQQFNSEEYIMLYTTIYNMCTQKPPHDYSQQLYDRFRESFEEYITSMVLPALREKHDEFMLRELVKRWGNHKLMVRWLSRFFNYLDRYFIARRSLPALNEVGLMCFRDLVFQEIKNNVRDAVITLIDREREGEQIDRALxxxVLGIFVEIGMGNMDAYENDFESAMLEDTASYYSRKAASWILEDSCPDYMLKAEECLKRVKERASYYLHSSSEYKLL

Protein Length: 252

Fln nts: ATGGGGGTAAAGAAAAAGCGGCCCGATGCCCATATCCACAAATAAAAACCATTCTCTTCTCAACGCATTCGCCCACTGATCAATCCCTGCAGCTGTACACGGCAGATGGACGATGCCACAGCCCTAGTACGTGATTGTCGCAGGCCATGAATTGCTGGTATTACGCGCTCGGCTCTACGGATTAAGAGTGTCCTGCTTGGGGCGAGGTCGAGGGTTTGAGATTTAGAAA_-_ATGACTATGAGCGAGCGGAAGATTATAGAGCTGGAGTCGGGATGGGAATTTATGCAGAAGGGAATTACGAAGCTCGAGAGCATTCTGGAAGGAATTCCCGAACAGCAATTCAATTCCGAGGAGTACATAATGCTTTACACGACTATTTACAACATGTGCACGCAAAAGCCTCCGCATGATTATTCGCAACAACTCTATGACAGATTCAGGGAGTCTTTTGAAGAGTACATTACTTCGATGGTTCTACCTGCATTGAGGGAGAAACATGATGAGTTTATGTTGAGAGAACTTGTAAAGCGATGGGGAAATCACAAATTAATGGTTCGGTGGCTTTCACGTTTCTTTAATTACTTGGATCGTTACTTCATTGCAAGGCGTTCTCTTCCTGCACTAAATGAAGTTGGTCTCATGTGCTTCCGTGATCTGGTTTTCCAAGAAATTAAGAATAATGTAAGGGATGCTGTGATTACTCTGATTGATAGGGAACGCGAAGGAGAGCAAATTGATCGAGCTTTGxxxxxxxxxGTTCTGGGCATCTTTGTGGAAATTGGGATGGGTAACATGGATGCTTATGAGAATGACTTTGAGTCAGCGATGTTGGAAGACACTGCTTCTTACTATTCTCGAAAGGCTGCATCATGGATATTAGAAGATTCTTGTCCGGATTATATGCTTAAGGCTGAGGAGTGTCTGAAACGAGTAAAAGAAAGAGCTTCCTATTATTTACATTCAAGCAGTGAATACAAGTTGTTGG

Fln Alignment:

Contig4736___MTMSERKIIELESGWEFMQKGITKLESILEGIPEQQFNSEEYIMLYTTIYNMCTQKPPHDYSQQLYDRFRESFEEYITSMVLPALREKHDEFMLRELVKRWGNHKLMVRWLSRFFNYLDRYFIARRSLPALNEVGLMCFRDLVFQEIKNNVRDAVITLIDREREGEQIDRALLxNVLGIFVEIGMGNMDAYENDFESAMLEDTASYYSRKAASWILEDSCPDYMLKAEECLKRVKERASYYLHSSSEYKLL
B8LQB2_________________MTMSERKIIELEAGWEFMQKGITKLKNILEGNPEQQINSEEYMMLYTTIYNMCTQKPPQDYSQQLYDRYRESFEEYITSMVLPALREKHDEFMLRELVERWGNHKIMVRWLSRFFNYLDRYFIARRSLPALNEVGLMCFRDLVYQEIKNNVRDAVITLIDREREGEQIDRALLxNVLGIFVEIGMGNMDAYENDFESAMLEDTASYYSRKAASWILEDSCPDYMLKAEECLKREKERVAHYLHSSSEQKLL

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
260		33		66	0.997452
324	25			75	0.996473
325	75		25		0.996473
345	80	20			0.995493
346		20		80	0.995493
347		20	80		0.995493
349			80	20	0.995493
606	16		83		0.994512
625	83		16		0.994512
853	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain