SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4732

Length: 1234 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene4732

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2735	15/15

Source	Descriptions	Term	Type	Identity
AutoFact	Cleavage and polyadenylation specificity factor, putative n=1 Tax=Ricinus communis RepID=B9RC56_RICCO	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	e3 ubiquitin-protein ligase	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	75%

Source	GOs	Term	Type	Identity
Blast2go	protein ubiquitination	GO:0016567	Biological Process	75%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	75%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	75%
Blast2go	membrane	GO:0016020	Cellular Component	75%
Blast2go	mitochondrion	GO:0005739	Cellular Component	75%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PSJ7

Fln msg: your sequence is shorter than subject: 272 - 397

Fln protein: GYALQCLLHMICVCFEYRRRHSSAQQQRSNSGGQSGHTNTNNNNSANQQSPGEQQESDDATDEEDDEGLPTERTSIAKRLESANTMFSFIWWIVGF*WISAGGQVLINEAPQLYWLCVVFLAFDVFFVVFCVALACVIGIAVCCCLPCIIAILYAVADQEGASEEDIGLLPKYKFKSIGGSGKITGEKSGPFGGVMTLSTGESSSERVLSAEDAECCICLSTYDDGVELRELPCSHHFHCTCIDKWLRINATCPLCKYNIIKSSNNAREEV*

Protein Length: 273

Fln nts: TGGGCTATGCCCTTCAGTGCCTGCTGCACATGATTTGCGTTTGCTTTGAGTATAGAAGGCGACACAGCAGTGCACAGCAGCAGAGGAGCAATTCAGGAGGTCAGAGCGGGCATACTAATACTAATAATAATAATTCGGCGAACCAGCAGAGCCCCGGAGAGCAGCAGGAGTCGGACGATGCTACCGACGAGGAAGACGATGAAGGCTTGCCCACAGAGCGGACTAGCATAGCAAAGCGGTTGGAGTCTGCCAACACAATGTTTTCTTTTATATGGTGGATAGTTGGATTTTAGTGGATATCTGCTGGTGGTCAGGTTTTAATTAATGAAGCTCCTCAGCTTTACTGGCTTTGCGTTGTGTTTCTGGCATTCGATGTATTTTTCGTAGTCTTCTGTGTGGCACTAGCCTGCGTAATTGGCATAGCTGTGTGCTGTTGCCTGCCATGCATTATTGCCATTTTGTATGCTGTGGCAGATCAGGAGGGGGCATCTGAAGAGGACATTGGCCTCCTTCCGAAATATAAATTCAAGTCCATTGGAGGTTCTGGAAAAATCACTGGTGAGAAATCTGGGCCTTTCGGAGGAGTCATGACTTTATCCACTGGAGAATCATCAAGTGAACGGGTTCTTTCTGCAGAGGATGCAGAGTGCTGCATTTGTCTGTCTACTTATGATGATGGTGTTGAATTACGGGAGCTTCCTTGTAGCCATCATTTTCATTGTACATGCATCGACAAATGGCTACGGATTAATGCTACATGTCCTCTTTGCAAATACAATATTATCAAGAGTAGCAATAATGCTAGGGAGGAGGTTTAA___CTTGTAAAGCCTTTTGTATGAGGTCTGTTTGCCAATGACTGAATTGTCACATGGTGCACTTGTATTTTGTATTGGAGATGATTACTTGAACCCTCAGTGATTTCGATGCAATTGTCTACGAAAGTAGGTCTGTTTTGTGTGTTTTGGAAGTTCTGCATGCAGTCATTTTAATTTCTAAATCACTCTACATTGATTTTTGAGAAATTCAAAGGCACATACTGAATAAGTGGAAGCTGCTTCTTTGGGAGATCAGTAGGTTGACAGAAGAGCAGCAGTGTCCAACTCTTAATAGTGTTTCTGGCACTCTACAAGGCTAGAGGCATATAGGATAGGATGTATTTTGAGTCAAATGAGAATTAATTATAATGTACCATTATTTAAATGTGTATAAGAAAGAGTTAGGAATGAGATAGGAA

Fln Alignment:

Contig4732___GYALQCLLHMICVCFEYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGXXXXXXXXXXXXXXXGLPTERTSIAKRLESANTMFSFIWWIVGF*WISAGGQVLINEAPQLYWXXXXXXXXXXXXXXXXXXXXXXIGIAVCCCLPCIIAILYAVADQEGASEEDIGLLPKYKFKSIGGSGKITGEKSGPFGGVMTLSTGESSSERVLSAEDAECCICLSTYDDGVELRELPCSHHFHCTCIDKWLRINATCPLCKYNIIKSSNNAREEV
C0PSJ7_________________GYALQCLLHMICVCFEYRRRHSNAQQQRSNSGGQSGHTNNNNNSANQQS-PGEQQESDDATDEEVDEVLSTERTSIAKRLESANTMFSFIWWIVGFYWISAGGQILTHDAPQLYWLCVVFLAFDVFFVVFCVALACVIGIAVCCCLPCIIAILYAVADQEGASEEDIGLLPKYKFKSIGGSEKISGEKSGPFGGIMNLCTGESSTERVLSAEDAECCICLSTYDDGVELRELPCSHHFHCTCIDKWLRINATCPLCKYNIIKSSNNAREEV

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
373		66		33	0.997452
512		50		50	1.0
559		60	40		1.0
595		80	20		0.995493
654		20		80	0.995493
867	28		71		1.0
871		71		28	1.0
940		80		20	0.995493
994	33			66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
122	134	TAA TAA TAA TAA T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain