SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4711

Length: 1613 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene4711 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene19868	26/26

Source	Descriptions	Term	Type	Identity
AutoFact	Fertilization-independent endosperm (Fragment) n=2 Tax=Hieracium RepID=B1ABR5_HIEPL	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	fertilization-independent endosperm protein	-	-	89%

Source	InterPros	Term	Type	Identity
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3		IPR019782	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWP5

Fln msg:

Fln protein: MARKGLGTDAAVGSLMSSKKRKEYKVTNRFQEGKRPLYAIAFNFIDARYHNIFATAGGSRVTIYQCLEGGAISVLQAYVDDDKDESFYTLSWACDVNGSPLLVAGGHNGIIRVLDVANEKVHKSFVGHGDSVNEIRTQALKPSLILSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDVYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAAVHSNYVDCTRWLGNFILSKSVDNEVVLWEPYSKEQSTSDGVVDILQKYPVPECDIWFIKFSCDFHFNSMAVGNREGKVYVWELQSSPPNLIARLSHAHCKHPIRQTAISHDGSTILCCCDDGSMWRWDVVQ*

Protein Length: 371

Fln nts: ATGGGGAAACTAACGTCTAATTGAACGAAGTGTTTGGCGCTGGTGTCGCCTTATAAATAGTGCCGCTTGTATCAGTGCATGGGGACATCAGTGTAGTGAACACTTTGAAAGGTGAGTTTGGGCTTCGACTCTCTACCCTGTGAACAAGTTCAGCTTAAACGCTGTTGCAGTAAAAGGTGTTGAAG_-_ATGGCAAGGAAGGGTTTGGGTACTGATGCGGCAGTAGGCTCATTAATGTCATCAAAGAAGAGGAAAGAGTATAAAGTCACCAATAGGTTTCAAGAGGGCAAGCGGCCTCTTTATGCCATTGCTTTCAATTTCATTGATGCTCGCTATCATAATATTTTCGCAACAGCAGGAGGAAGCCGGGTGACCATTTACCAATGCTTGGAAGGAGGTGCTATTTCTGTTTTGCAGGCATATGTTGATGATGATAAGGATGAATCATTTTACACATTAAGTTGGGCATGCGATGTGAATGGTTCACCATTATTAGTTGCTGGTGGTCACAATGGTATAATTCGAGTGCTTGATGTTGCAAATGAAAAGGTCCATAAGAGTTTCGTTGGCCATGGAGATTCTGTGAATGAAATAAGGACCCAAGCACTGAAACCTTCCCTTATTTTATCTGCTAGCAAAGATGAATCTGTACGACTCTGGAATGTTCAAACTGGAATATGCATTTTGATATTTGCTGGAGCTGGGGGACATCGCAATGAAGTTCTCAGTGTAGATTTTCATCCTTCAGATGTATATCGTATTGCAAGCTGTGGCATGGACAACACGGTCAAGATCTGGTCTATGAAAGAGTTTTGGACCTATGTTGAGAAGTCATTTACCTGGACCGATTTGCCATCGAAATTCCCCACGAAGTACGTGCAATTTCCTGTTTTTATTGCTGCAGTGCATTCAAACTATGTGGATTGCACTAGATGGCTTGGCAACTTCATCCTATCAAAGAGTGTGGACAATGAAGTAGTTTTGTGGGAGCCTTACAGCAAGGAGCAAAGTACCAGTGATGGAGTTGTGGACATCCTGCAGAAGTATCCAGTGCCAGAATGTGACATTTGGTTTATCAAGTTTTCATGCGATTTCCACTTTAATTCTATGGCAGTTGGCAACAGGGAAGGAAAAGTTTATGTTTGGGAATTACAGTCAAGCCCTCCTAATTTAATTGCCAGGTTATCACATGCACATTGCAAACATCCTATTAGACAGACAGCTATATCTCATGACGGAAGTACCATTCTCTGCTGCTGTGACGATGGTAGTATGTGGCGCTGGGACGTGGTTCAGTAA___AATCAGCAATTTCCTGGCTGAATGTGCATTCGTATGTTTCAGATATTTACACCTGCACACTAATGGCTTTGATTGTTATTAGCTTCTGGTTGATGTTGTGGAAATTTTGTCTTTAGCCAAACATTTTGTTTTGCCAGAATAGTCAACAGAGTTTTCTGTTTGCTAGAATACAGCATGCCCATTTTTATAAAGCTACACTTTGCGGGACATTTGAAATTAGTATGCTCCCCAGGGCCTTGTGTTCATAAAGATGCCTTCAATGATTCAGTTGTTATTATCATTTTTAATGGAGGCAATAGTCTATTCACATCAGATAGT

Fln Alignment:

Contig4711___MARKGLGTDAAVGSLMSSKKRKEYKVTNRFQEGKRPLYAIAFNFIDARYHNIFATAGGSRVTIYQCLEGGAISVLQAYVDDDKDESFYTLSWACDVNGSPLLVAGGHNGIIRVLDVANEKVHKSFVGHGDSVNEIRTQALKPSLILSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDVYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAAVHSNYVDCTRWLGNFILSKSVDNEVVLWEPYSKEQSTSDGVVDILQKYPVPECDIWFIKFSCDFHFNSMAVGNREGKVYVWELQSSPPNLIARLSHAHCKHPIRQTAISHDGSTILCCCDDGSMWRWDVVQ
A9NWP5_________________MARKGLGTDAAIGSIVSSKKKKEYRVTNRFQEGKRPLYAIAFNFIDARYHNIFATAGGNRVTIYQCLEGGVISVLQAYVDEDKEESFYTLSWACDVNGSPLLVAGGHNGIIRVLDVANEKVHKSFVGHGDSVNEIRTQALKPSLILSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSELYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAAVHSNYVDCTRWLGNFILSKSVDNEVVLWEPYSKEQSTSDGVVDILQKYPVPDCDIWFIKFSCDFHYNSMAVGNREGKVYVWELQSSPPNLIARLQHAQCKSPIRQTAISHDGSTILCCCDDGSMWRWDVVQ

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
687	75	25			0.996473
849		50		50	1.0
1329		77		22	0.999999
1476		83	16		0.994512
1518			75	25	0.996473
1535	25	75			0.996473
1536	25	75			0.996473
1537		75		25	0.996473
1540		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain