SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4698

Length: 955 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene4698

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2223	10/13
SustainPine v2.0	sp_v2.0_unigene36219	3/13

Source	Descriptions	Term	Type	Identity
AutoFact	Putative dienelactone hydrolase family protein n=1 Tax=Salvia miltiorrhiza RepID=A6ZI65_SALMI	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	endo- -beta-d-glucanase	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	response to salt stress	GO:0009651	Biological Process	72%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	72%
Blast2go	cytoplasm	GO:0005737	Cellular Component	72%
Blast2go	apoplast	GO:0048046	Cellular Component	72%
Blast2go	nucleus	GO:0005634	Cellular Component	72%
Blast2go	plasma membrane	GO:0005886	Cellular Component	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	Dienelactone hydrolase	IPR002925	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTV6

Fln msg:

Fln protein: MAGRQCCENPPPELGNANPSMNINLKGRVETVGHLKAYVSCGPRHTQKAIILVSDVYGYEALNLRKLADKIASCGYFVLVPDYFDGDPYVCACSGDPFANQPEWLQKHQPVEGLEDSKKLIEILNNKGITSIGASGFCWGAKVVVELAKGDYIKAGVLLHPSLLLEDDFRVIKAPIAILGAEFDHITPPNLIEQYEAILSARPEIDSFVKIYPAVSHGWAIRYDNDNEIAVKNAELAHDKMLEWFGTYLK*

Protein Length: 252

Fln nts: ACATTTTGGGGGAGTAATAGAGAGAGCCGAGCCTTCTGTATTGTGTATTGTGTGTGGTGGTGTGACAAGTTACTTCCCGAGAAGACAGGAG_-_ATGGCAGGTCGTCAGTGCTGTGAGAACCCTCCTCCCGAGTTGGGTAACGCCAATCCGAGCATGAACATAAATTTAAAAGGGCGCGTGGAAACTGTGGGACATCTAAAGGCCTACGTTTCATGTGGACCCCGACACACTCAGAAGGCCATTATTCTCGTCTCTGATGTTTATGGATATGAGGCCCTCAATTTGAGAAAGCTTGCTGACAAGATAGCATCATGTGGATATTTTGTGCTGGTCCCTGACTATTTTGATGGGGATCCATATGTATGTGCATGTTCTGGAGATCCGTTTGCCAACCAGCCAGAATGGCTTCAAAAGCATCAGCCAGTTGAAGGACTTGAGGACTCCAAAAAGCTTATTGAGATTTTGAACAACAAAGGCATAACATCGATTGGTGCAAGTGGATTTTGCTGGGGAGCCAAGGTGGTAGTAGAGCTGGCAAAGGGAGATTACATAAAAGCAGGAGTATTATTGCATCCATCTCTTCTTCTTGAGGATGATTTCAGAGTAATCAAAGCACCTATTGCTATATTGGGAGCTGAATTTGATCATATTACACCCCCAAATCTCATTGAGCAATACGAAGCAATTTTGTCTGCAAGACCAGAGATAGATAGTTTTGTGAAGATCTACCCTGCAGTTTCTCATGGCTGGGCAATAAGATACGACAATGACAATGAAATTGCCGTGAAAAATGCGGAGTTGGCTCACGATAAAATGTTGGAATGGTTTGGTACATACTTGAAGTAA___TAGGAAATTGTGCTATATCCTGAATAAGCAAATTGTATGTACTATTTCTCATATTATTTTGTGGTACTAGCTCCAAGAATTACTTAACATAGGATTTATAGCATGCGTGTC

Fln Alignment:

Contig4698___MAGRQCCENPPPELGNANPSMNINLKGRVETVGHLKAYVSCGPRHTQKAIILVSDVYGYEALNLRKLADKIASCGYFVLVPDYFDGDPYVCACSGDPFANQPEWLQKHQPVEGLEDSKKLIEILNNKGITSIGASGFCWGAKVVVELAKGDYIKAGVLLHPSLLLEDDFRVIKAPIAILGAEFDHITPPNLIEQYEAILSARPEIDSFVKIYPAVSHGWAIRYDNDNEIAVKNAELAHDKMLEWFGTYLK
A9NTV6_________________MAGPQCGENPPQELGNPSPSMSLDLKGRVETLGHLTAYVSYGSRDIQKAVILVSDVYGYEALNLRRLADKVASCGYFVLVPDYFHGDPYVCACTGDPFANQPEWLQKHQPAKGLEDSKKLIEILNNKGITSIGASGFCWGAKVVVELAKGDYIKAGVLLHPSLLLEDDFRVIKAPIAILGAEFDHITPPEFIEKYEAILSARPEVDSFVKIYPAVAHGWAVRYNNDNEVAMKNAELAHGKMLEWFSTYLK

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
306			75	25	0.996473
363		50		50	1.0
546			20	80	0.995493
547	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain