SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4668

Length: 944 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene4668 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23613	14/14

Source	Descriptions	Term	Type	Identity
AutoFact	Rop4 small GTP binding protein n=8 Tax=Embryophyta RepID=Q9XF08_MAIZE	-	-	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	rho family gtpase	-	-	95%

Source	GOs	Term	Type	Identity
Blast2go	GTP binding	GO:0005525	Molecular Function	95%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	95%
Blast2go	protein kinase binding	GO:0019901	Molecular Function	95%
Blast2go	nucleolus	GO:0005730	Cellular Component	95%
Blast2go	phragmoplast	GO:0009524	Cellular Component	95%
Blast2go	plasma membrane	GO:0005886	Cellular Component	95%

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily, Rho type	IPR003578	-	-
Sma3		IPR013753	-	-
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	A %	C %	G %	Probability
750	33		66	0.997452
751	66		33	0.997452
809	33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain