SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4666

Length: 1024 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene4666 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1853	6/10
SustainPine v2.0	sp_v2.0_unigene17884	4/10

Source	Descriptions	Term	Type	Identity
AutoFact	mRNA-decapping enzyme subunit 2 [Arabidopsis thaliana] dbj\|BAC43684.1\| unknown protein [Arabidopsis thaliana] gb\|AAO63396.1\| At5g13570 [Arabidopsis thaliana] gb\|AED91912.1\| mRNA-decapping enzyme subunit 2 [Arabidopsis thaliana]	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	protein	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:3.6.1.3-	-	0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	deadenylation-independent decapping of nuclear-transcribed mRNA	GO:0031087	Biological Process	83%
Blast2go	m7G(5')pppN diphosphatase activity	GO:0050072	Molecular Function	83%
Blast2go	manganese ion binding	GO:0030145	Molecular Function	83%
Blast2go	mRNA binding	GO:0003729	Molecular Function	83%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	83%
Blast2go	cytoplasmic mRNA processing body	GO:0000932	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	NUDIX hydrolase domain	IPR000086	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Aminoglycoside phosphotransferase	IPR002575	-	-
Sma3	ABC-1	IPR004147	-	-
Sma3	mRNA decapping protein 2, Box A	IPR007722	-	-

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	A %	C %	G %	Probability
272	20		80	0.995493
357	40	40		1.0
363	33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain