SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4664

Length: 1190 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene4664

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7941	11/11

Source	Descriptions	Term	Type	Identity
AutoFact	WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9S4H8_RICCO	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	protein	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	response to starvation	GO:0042594	Biological Process	73%
Blast2go	leaf senescence	GO:0010150	Biological Process	73%
Blast2go	autophagy	GO:0006914	Biological Process	73%
Blast2go	metal ion binding	GO:0046872	Molecular Function	73%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PPX4

Fln msg: Overlapping hits, possible frame ERROR between 648 and 647, your sequence is shorter than subject: 368 - 392

Fln protein: TNCEPFKEIFRRELISSIGGGGDGCGIGIVEMVFCSNILAIVGGGSNPRYPPNKVMIWDDHQGRCIGELSFRAQVRAVRVSRDKIVVVLEHKIFVYDFPADLKLIHQMETIPNAKGLVALSSSTALGNGNSVLVCPGLRRGEVRVEHLTANKGSKTDFIAAHDSHLACLALTSDGHRLATSSDKGTLVRIFNTLDGTRLQELRRGADRAQIYSLAxxSLNAQWLALSSDKGTVHVFGLRTFASQDDRADVAHLAYSQPSKDDTHAGNNRGIFDSNSSAFLSSNPGSSLAFMKGVLPSYFSSEWSFAQFHLPEEIRAVVAFGEQKNTILIVGTDGSFYKCSFDPLHGGEMVQQEFIKFVRPYEDEPQL*

Protein Length: 369

Fln nts: ACTAACTGCGAGCCCTTCAAGGAGATCTTTCGCAGGGAATTGATATCGAGCATTGGCGGAGGCGGAGATGGATGCGGAATAGGCATCGTGGAGATGGTCTTCTGCAGCAACATATTGGCCATCGTGGGCGGAGGTTCGAATCCCCGTTACCCACCCAACAAAGTGATGATATGGGACGACCACCAGGGCCGATGCATCGGGGAGCTGTCCTTCAGGGCGCAGGTGAGGGCAGTCAGGGTCAGTCGGGACAAGATCGTTGTGGTCTTAGAGCACAAGATCTTTGTCTATGATTTTCCTGCAGACTTGAAGCTTATTCACCAAATGGAGACCATACCCAATGCCAAAGGCCTCGTTGCCCTCTCTTCATCCACTGCACTGGGAAATGGGAATTCTGTGCTTGTGTGCCCTGGGCTTCGCCGTGGAGAGGTGCGCGTCGAACATTTGACCGCGAACAAGGGCAGCAAGACCGACTTCATCGCAGCTCACGATTCCCATCTGGCCTGCTTGGCACTTACTTCGGACGGCCATCGCCTGGCCACATCCAGCGACAAGGGTACCCTCGTTCGCATTTTCAATACACTCGATGGCACCCGATTGCAAGAGTTGAGACGTGGAGCTGACAGAGCACAAATATACAGTTTAGCAxxxxxxTCTCTCAATGCTCAGTGGCTTGCACTTTCAAGTGACAAAGGAACAGTGCATGTGTTTGGGCTCAGGACATTTGCCTCCCAAGACGATAGAGCAGATGTTGCTCACTTGGCATATAGCCAACCTTCAAAGGATGACACTCACGCAGGCAATAACAGAGGCATATTTGACTCCAACTCCTCTGCTTTTCTTTCTTCCAACCCTGGTTCAAGCCTTGCTTTCATGAAAGGAGTTCTACCTAGCTACTTCAGTTCAGAATGGTCATTTGCTCAATTCCACTTGCCAGAGGAAATTCGGGCAGTTGTTGCATTTGGCGAACAAAAGAATACAATCCTAATTGTAGGCACAGATGGAAGCTTTTACAAGTGTAGCTTTGATCCTCTGCATGGAGGTGAAATGGTGCAACAAGAATTTATAAAATTTGTGAGACCTTATGAAGATGAACCTCAGTTATAGTACTTTAAAAGCTATATTCTGGGAGAGGAGCTGTAAACTTGTATGTAATTCAGCTGGAAAGTTGAAGAACTCATTTCTAAGAGTGAAC

Fln Alignment:

Contig4664___NCEPFKEIFRRELXXXXXXXXXXXXXXXVEMVFCSNILAIVGGGSNPRYPPNKVMIWDDHQGRCIGELSFRAQVRAVRVSRDKIVVVLEHKIFVYDFPADLKLIHQMETIPNAKGLVALSSSTALGNGNSVLVCPGLRRGEVRVEHLTANKGSKTDFIAAHDSHLACLALTSDGHRLATSSDKGTLVRIFNTLDGTRLQELRRGADRAQIYSLAxSLNAQWLALSSDKGTVHVFGLRTFASQDDRADVAHLAYSQPSKDDTHAGNNRGIFDSNSSAFLSSNPGSSLAFMKGVLPSYFSSEWSFAQFHLPEEIRAVVAFGEQKNTILIVGTDGSFYKCSFDPLHGGEMVQQEFIKFVRPYEDEPQL
C0PPX4_________________NCEPFKETFRRELISSIGGGGDGGGIGIVEMVFRSNILAIVGGGSNPRYPPNKVIIWDDHQGRCIGELSFRAQVRAVRVSRDKIVVVLEHKIFVYDFPADLKLIHQMETIPNAKGLVALSSSTSPGNGNSVLVCPGLHRGEVRVEHLSADKGNKTNVIAAHDSHLACLALTSDGHRLATSSDKGTLVRIFNTLDGTRLQELRRGADRAQIYSLAxSPNAQWLSLSSDKGTVHVFGLRTFASQDDREDAAHLAYNQLSKDD----NNRGIFDSDSSGFLSSNPGSSLSFLKGVLPSYFSSEWSFAQFHLPEEIRAVVAFGAQKNTVLILGTDGSFYKCSFDPLHGGEMVQQEFIKFVRPYEDETQL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain