SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4663

Length: 903 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene4663 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7202	10/10

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[I] COG0657 Esterase/lipase	-	-	7.0e-18	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Blast2go	protein	-	-	0.0	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	0.0	67%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	0.0	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	Alpha/beta hydrolase fold-3	IPR013094	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P086

Fln msg: your sequence is shorter than subject: 274 - 338

Fln protein: VRLYLPRLEVMDGGKVPVLLYFHGGGFCIGSAASPVYHSYLNKVVAEAKVICVSVDYRKAPEHRLPAAYDDCFGALEWLDRQAMALNGVSVDPWLASHADFSNVFLAGDSAGANILHQVGIRAGERKWDGVCLQGAILVHPFFGGEERIGCELEADAEVEGFNIMTDAIWSISLPAGADKDHPFRNPVGPRSPALSTLVYPRTLVFVAGKDLLRARGIWYFESLKKAGKEVDLVMTEDETHVFHLFNQKSENTFRMLKRISDFMHSSAIHSGH*

Protein Length: 275

Fln nts: CGTTCGTCTCTATCTCCCTCGTCTCGAGGTGATGGATGGGGGAAAAGTTCCGGTGCTTCTCTACTTTCATGGAGGGGGTTTCTGCATCGGATCAGCTGCGTCGCCAGTTTATCATAGCTATCTTAATAAAGTGGTTGCAGAGGCCAAGGTGATATGCGTCTCGGTGGATTACAGGAAAGCGCCCGAGCATCGCCTCCCTGCGGCTTATGACGATTGTTTCGGTGCTCTTGAATGGCTTGACCGCCAAGCAATGGCACTGAATGGGGTCTCTGTGGATCCGTGGCTCGCTTCACACGCAGATTTCAGCAACGTTTTCTTGGCAGGTGACAGCGCCGGTGCCAACATCTTGCACCAGGTGGGTATCCGTGCTGGTGAAAGGAAATGGGATGGGGTCTGTTTACAAGGAGCCATTCTGGTTCACCCCTTCTTTGGCGGAGAAGAACGAATCGGCTGCGAATTAGAGGCGGATGCGGAGGTGGAGGGTTTTAATATAATGACTGATGCAATCTGGAGTATCTCTCTCCCCGCGGGAGCCGACAAAGATCACCCTTTTCGCAACCCAGTTGGACCCCGTTCTCCGGCTCTGTCCACTCTGGTGTATCCTCGGACTCTGGTATTTGTGGCAGGGAAGGATCTGCTGCGAGCTCGAGGTATTTGGTACTTCGAATCCCTAAAAAAGGCCGGGAAAGAAGTCGATCTCGTGATGACGGAAGATGAAACCCACGTATTTCATCTGTTCAATCAGAAATCAGAGAATACGTTCCGCATGCTGAAACGTATTTCAGATTTCATGCATTCCTCGGCCATTCACTCTGGCCACTGA___GACAGCTGTGACGTATGTTATCAAATATCTACGGATATAGCGTAGATTTAGTTTACTTCGTCGTCGTAAATTCTCTTTGG

Fln Alignment:

Contig4663___VRLYLPRLEVMDG-GKVPVLLYFHGGGFCIGSAASPVYHSYLNKVVAEAKVICVSVDYRKAPEHRLPAAYDDCFGALEWLDRQAMALNGVSVDPWLASHADFSNVFLAGDSAGANILHQVGIRAGERKWDGVCLQGAILVHPFFGGEERIGCELEADAEVEGFNIMTDAIWSISLPAGADKDHPFRNPVGPRSPALSTLVYPRTLVFVAGKDLLRARGIWYFESLKKAGKEVDLVMTEDETHVFHLFNQKSENTFRMLKRISDFMHSSAIHSGH
A9P086_________________VRFYLPRLEVTNGKGRVPVLLYFHGGGFCIGSAASPVYHHYLNQVATDAKVICLSVDYRRAPEHRLPAAYDDCFGVLEWLDRQAMVLEGVSVDPWLASHADFSKVFLAGDSAGANILHQVGIRASGRNWDGLCLQGAILVHPFFGGAERIGCELLAEAEVDAFNTMTDAIWSISLPAEADRDHPFCNPVGPRSPALSTLVYPRMLIFVAGKDLLRDRGIWYYEEIKKAGIDTDLVMTEGESHVFHLFNPKSENVPLMMKRIFDFIHSSSENPNH

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
95	33			66	0.997452
293	75	25			0.996473
294		25	75		0.996473
295	75	25			0.996473
296	25		75		0.996473
803	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain