SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4652

Length: 1547 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene4652

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3739	18/22
SustainPine v2.0	sp_v2.0_unigene15891	4/22

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cullin 1-like protein C [Petunia integrifolia subsp. inflata]	-	-	0.0	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%

Source	InterPros	Term	Type	Identity
Sma3	Cullin, conserved site	IPR016157	-	-
Sma3	Cullin homology	IPR016158	-	-
Sma3	Cullin, N-terminal	IPR001373	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQB2

Fln msg: Overlapping hits, possible frame ERROR between 186 and 174, and overlapping frame ERROR between 857 and 845, your sequence is shorter than subject: 364 - 744

Fln protein: NKGVAGSTSAELLATFCDNILKKGGSEKLSDEDIEDTLEKVVKLLAYISDKDLFAEFxxxxxxRRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTNFEEYLNGNPLAHPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFKEFYQTKTKHRKLTWIYSLGTCNIIGKFDPKPMELIVTTYQASALLLFNASERLSYSEIKSQLNLTDEDIVRLLHSLACAKYKILNKEPNTKTVAQTDYFEFNAKFTDKMRRIKIPLPPVxxxxxxxEDVDKDRRYAIDASIVRIMKSRKVLSHQQLVMECVEQLGRMFKPDFKAIKKRIEDLITREYLERDKDNPNMFRYLA*

Protein Length: 365

Fln nts: AACAAGGGAGTTGCAGGAAGCACAAGTGCAGAATTATTGGCAACATTTTGTGATAACATCTTGAAGAAGGGTGGTAGTGAAAAATTAAGTGATGAAGATATTGAGGATACGCTTGAAAAGGTTGTCAAGCTTCTGGCATACATTAGTGATAAAGATTTGTTTGCAGAATTTxxxxxxxxxxxxxxxxxxCGCAGGCTTCTATTTGATAAAAGTGCAAATGATGATCATGAAAGAAGTATATTGACAAAATTGAAGCAACAGTGTGGAGGCCAGTTTACTTCTAAAATGGAGGGAATGGTTACTGATTTAACTTTAGCAAGGGAGAATCAAACAAATTTTGAGGAATATCTTAATGGCAACCCACTTGCACATCCCGGAATAGATTTGACTGTGACTGTTTTGACAACTGGATTTTGGCCAAGTTACAAGTCATTTGACCTTAATCTACCTGCTGAGATGGTTAAATGTGTTGAGGTGTTCAAAGAGTTTTATCAAACAAAAACTAAACATCGGAAGCTTACATGGATATATTCTTTGGGAACCTGTAATATTATTGGGAAGTTTGATCCTAAGCCAATGGAACTTATTGTGACAACTTACCAGGCATCTGCACTTCTGCTGTTCAATGCATCAGAGAGGCTAAGTTACTCTGAAATCAAGTCTCAGTTGAATTTAACTGATGAAGATATTGTCAGATTGCTGCACTCCCTTGCATGTGCAAAATACAAAATCCTCAACAAAGAACCAAACACAAAAACTGTGGCACAAACAGATTATTTTGAATTCAACGCAAAATTTACAGACAAAATGAGGAGAATAAAGATTCCTCTTCCACCAGTGGAxxxxxxxxxxxxxxxxxxCGAGGATGTAGATAAAGATCGACGTTATGCTATTGACGCATCAATTGTAAGAATCATGAAGAGCCGAAAAGTTTTATCTCACCAGCAGCTAGTGATGGAGTGCGTTGAGCAACTGGGACGGATGTTCAAGCCTGATTTCAAGGCAATCAAGAAGAGAATTGAAGATCTAATTACAAGGGAATACTTGGAGAGGGACAAAGATAATCCTAATATGTTCAGATATTTGGCCTGAACTGTGGGTGCAATGTTGTTTGTACAAGCTTTTTTAAGCTTGCTTCATGCAGCAATTCATCTATTGAATTTCTCCTAGGTGCTTGTATTTATATTATATAGTGCTTCCAATGTTGGCGAAGATCTTATTACAAAGCATCACTGCTCACTCAAACGTTGACGGTTGTAGACATCCTCAGAAATGGGTTTGGCCGCCATGAGGGTTTCCACAGAAGGATATCATGAAACTTCACTGTTTGCTGATATGGTCACTGAGCTTTTTGTTTTTTAATTTATTTGGATGCTTGGTAAAGAGGCATGTGGTGCAGGTGGAACTTGCACCTGTTTCCCCTTTGTTGAAACAGTGAAGGATGCAGTGTCGACAATTCCCAAGTTATTTTTCTCCAATTCATATGATTGGATATGCGGTAATCCAGCAAGTTCTATGTTTTGTATTATGCTCAAATGTCACAACTGAA

Fln Alignment:

Contig4652___NKGVAGSTSAELLATFCDNILKKGGSEKLSDEDIEDTLEKVVKLLAYISDKDLFAEFYxxxxARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTNFEEYLNGNPLAHPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFKEFYQTKTKHRKLTWIYSLGTCNIIGKFDPKPMELIVTTYQASALLLFNASERLSYSEIKSQLNLTDEDIVRLLHSLACAKYKILNKEPNTKTVAQTDYFEFNAKFTDKMRRIKIPLPPVDExxxxIEDVDKDRRYAIDASIVRIMKSRKVLSHQQLVMECVEQLGRMFKPDFKAIKKRIEDLITREYLERDKDNPNMFRYLA
B8LQB2_________________NKGVAGSTSAELLATFCDNILKKGGSEKLSDEDIEDTLEKVVKLLAYISDKDLFAEFYxxxxARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTNFEEYLNENPLAHPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFKEFYQTKTKHRKLTWIYSLGTCNIIGKFDPKPMELIVTTYQASALLLFNASERLSYSEIKSQLNLTDEDIVRLLHSLACAKYKILNKEPNTKTVAQTDYFEFNAKFTDKMRRIKIPLPPVDExxxxIEDVDKDRRYAIDASIVRIMKSRKVLSHQQLVMECVEQLGRMFKPDFKAIKKRMEDLITREYLERDKDNPNMFRYLA

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
764		33		66	0.997452
1306	85			14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain