SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4632

Length: 1175 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene4632 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9212	9/9

Source	Descriptions	Term	Type	Identity
AutoFact	Ceramidase, putative n=1 Tax=Ricinus communis RepID=B9S377_RICCO	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	neutral ceramidase-like	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ceramidase.	EC:3.5.1.23	-	0.0	79%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Sphingolipid metabolism	00600		0.0	79%
Blast2go	Metabolic pathways	01100		0.0	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	ceramidase activity	GO:0017040	Molecular Function	0.0	79%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	0.0	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Sugar transporter, conserved site	IPR005829	-	0.0	-
Sma3	Neutral/alkaline nonlysosomal ceramidase	IPR006823	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NLS9

Fln msg: your sequence is longer than subject: 353 - 133

Fln protein: MGRTNSLISGDNKGTAARLMEDWYEHKSVDPPFAEAQMHGFAYHTSPWRQLYRRVSNLIPHADDGIQDISESFHSTGGRPTTRMASISHRVRSSFRHSERPQFVAAFCQSNVGDVSPNVLGTFCIDTGLPCDFNHSTCNGKNELCYGRGPGYPDEFASTRIIGERQFNKATELFNSATKQLSGKIDYRHVHLDFSNLEVKILDEDHSKERIVKTCPAAMGFGFAAGTTDGPGAFDFTQGDNKGNPFWKLIRNLLKTPNAEQVECQKPKPILLDTGEMTQPYAWAPSILPLQILRIGQFVILCVPGEFTTMAGRRLREAVREELVTHVKGEFGDDTHSNSRAYQYLFSVCRDL*

Protein Length: 354

Fln nts: TGGAAGTTTTAACTGGTTTGCAACACATGGAACTTCA_-_ATGGGGCGAACAAATTCTCTAATTAGTGGTGACAACAAAGGAACTGCGGCACGATTGATGGAGGACTGGTATGAACACAAGAGTGTTGATCCACCTTTTGCTGAGGCTCAAATGCATGGTTTTGCTTACCATACAAGTCCATGGAGACAACTTTATAGAAGAGTTTCAAACTTAATTCCACATGCAGATGATGGTATACAAGATATTTCAGAATCTTTTCATAGCACAGGTGGTAGGCCAACTACGAGGATGGCAAGTATTTCCCATCGGGTTCGAAGCTCATTCAGGCACAGTGAAAGACCTCAATTTGTTGCTGCCTTTTGTCAGTCAAATGTTGGTGACGTGAGCCCAAATGTCTTGGGTACATTTTGTATAGACACTGGATTGCCTTGTGATTTCAATCACAGCACTTGTAATGGGAAAAATGAGTTATGTTATGGTCGAGGCCCAGGATACCCAGATGAATTTGCAAGCACTCGCATAATTGGAGAGAGACAATTCAACAAAGCTACTGAATTATTCAACAGTGCAACTAAGCAGTTGTCAGGTAAAATTGATTATCGTCATGTGCATCTTGACTTTTCCAATCTCGAGGTAAAAATTTTAGATGAAGATCACAGCAAGGAAAGGATTGTTAAGACATGCCCTGCTGCAATGGGCTTTGGCTTTGCTGCTGGAACAACTGATGGTCCTGGAGCATTTGATTTCACGCAGGGGGATAACAAAGGGAATCCATTTTGGAAGCTGATTAGAAATTTATTGAAAACACCAAATGCAGAACAGGTTGAGTGTCAAAAGCCAAAACCCATCCTGCTCGACACAGGGGAAATGACTCAACCTTATGCATGGGCGCCATCTATTCTTCCGCTTCAGATTCTAAGGATTGGTCAGTTTGTCATCCTTTGTGTACCTGGAGAGTTCACAACAATGGCTGGAAGGCGTCTACGGGAAGCTGTGAGAGAGGAACTCGTTACACATGTGAAAGGTGAATTTGGAGATGACACTCATAGTAATAGCAGGGCTTACCAATACCTATTCTCAGTATGTCGCGACCTTTGA___AGAGTATGAAATTCAACGATACGAGGGGGCTTCCACTCTGTTCGGACCACATACATTAAATGCATATATTCAAGAGTTC

Fln Alignment:

Contig4632___FTQGDNKGNPFWKLIRNLLKTPNAEQVECQKPKPILLDTGEMTQPYAWAPSILPLQILRIGQFVILCVPG
A9NLS9_________________FKQGDVKGNPFWKLVRNLLKTPNAEQVECQKPKPILLDTGEMSQPYAWAPSILPLQILRIGQFVILCVPG

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
301		25		75	0.996473
302	75	25			0.996473
304			75	25	0.996473
323		33		66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain