SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4627

Length: 1171 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene4627 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5125	14/14

Source	Descriptions	Term	Type	Identity
AutoFact	Calcium dependent protein kinase 23 n=4 Tax=rosids RepID=B9HCX6_POPTR	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	calcium-dependent protein kinase	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Calcium/calmodulin-dependent protein kinase.	EC:2.7.11.17	-	0.0	85%

Source	GOs	Term	Type	Identity
Blast2go	protein autophosphorylation	GO:0046777	Biological Process	85%
Blast2go	calmodulin-dependent protein kinase activity	GO:0004683	Molecular Function	85%
Blast2go	calcium ion binding	GO:0005509	Molecular Function	85%
Blast2go	ATP binding	GO:0005524	Molecular Function	85%
Blast2go	plasma membrane	GO:0005886	Cellular Component	85%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQ38

Fln msg: your sequence is shorter than subject: 192 - 529

Fln protein: KKKALRVIADHLSVEETKGIKDMFKMMDTDNSGTISYEKLKAGLHKLGSHMDESEVQTLMEAADADGNGTLDYREFVAASLHMQSIDNDEYLRKAFLYFDKDGSGYIEIEEFREALADDFGPDDIDVVNNIFNEVDADKDGCISYEEFASMMKTGTDWRKASRHYSRGRFNSLSIKLVRDGSLQMENNERR*

Protein Length: 193

Fln nts: CAAAAAGAAAGCTTTAAGGGTTATCGCTGACCATTTATCTGTGGAAGAAACCAAAGGCATTAAAGATATGTTCAAGATGATGGACACTGATAACAGTGGTACAATATCATATGAAAAGCTGAAAGCAGGTCTTCATAAGCTTGGTTCCCATATGGATGAATCAGAAGTGCAGACATTAATGGAGGCTGCGGATGCTGATGGAAATGGCACACTCGATTATCGAGAATTTGTTGCGGCTTCGCTTCATATGCAGAGCATAGACAATGATGAATACTTACGTAAGGCATTTCTGTACTTTGACAAAGATGGCAGTGGTTACATTGAAATCGAGGAGTTTAGAGAAGCCTTAGCTGATGACTTTGGTCCAGATGACATAGATGTGGTGAACAACATTTTTAATGAGGTGGATGCAGACAAGGATGGATGTATTAGTTACGAAGAGTTTGCATCCATGATGAAAACTGGTACAGACTGGAGAAAAGCCTCTCGACATTATTCACGAGGGAGGTTTAACAGTCTCAGCATAAAATTGGTCAGGGATGGCTCTTTGCAGATGGAAAATAATGAAAGGAGATAA___TCAAGTCTCTAAGGGAATTTCTTCCATTGTTAAAGAGTCTAAATGAGACATTTTATGAAGGCCTTTCAAGGTGAATGATCGTTTTGTGCCATATTATTCTCTGTATGCATTTTCTGGGTGCTGGTGTTGGTGGCTCCTAGCTTGTGGAATGAGGCTAGCCTCATATGGAGAGTATTACAATGATTTGTGCTCCATGTATACAATTCAAGCAAGTGTATGCATCAAGATTGTAGAGTTTTGGTTATTGGTATTCATGCCTTAAGTCGTTAAGGTAAGCTTACTGTTTGATGCTAAAGTTCATTCATATCTGGCAAGCTGTTGAAAGGTGCACCGATGCAAGATGTTCTTTTGACTGTGTTTAGATATCCTAGTCCTTTTGGGGACATGGATCACACAAAAATTCTCTAATCTGGCTGGCTTGATTTCTTATAAAATTCTTTGACTAGGGTGATCAAGTCATGTTGTAATACCTGCGTTTGCACACAGTCAAGAAACTTCGAATGCCTGGTTTCAGCACACATGACAACCTGCGGTAAGTTATTTAATGCTTTTATGAGATTTTATGTAGAGCCAACAAAGGAGATAATGGTATGT

Fln Alignment:

Contig4627___KKKALRVIADHLSVEETKGIKDMFKMMDTDNSGTISYEKLKAGLHKLGSHMDESEVQTLMEAADADGNGTLDYREFVAASLHMQSIDNDEYLRKAFLYFDKDGSGYIEIEEFREALADDFGPDDIDVVNNIFNEVDADKDGCISYEEFASMMKTGTDWRKASRHYSRGRFNSLSIKLVRDGSLQMENNERR
C0PQ38_________________KKRALRVIADHLSVEETKGIKDMFKMMDTDNSGSISYDKLKAGLHKLGSQMDESEVQILMDAADADGNGMLDYREFVAASLHMQSIDNDDYLRKAFLFFDKDGSGYIEIEEFREALADDFGPNDIDVVNSIFNEVDADKDGRISYEEFASMMKTGTDWRKASRHYSRGRFNNLSIKLVRDGSLQMENNERR

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
322	83	16			0.994512
325	16			83	0.994512
383		40		60	1.0
393		20		80	0.995493
394		20	80		0.995493
395		20		80	0.995493
583		33		66	0.997452
584		33		66	0.997452
586			66	33	0.997452
1031	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain