SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4616

Length: 972 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene4616 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2525	11/11

Source	Descriptions	Term	Type	Identity
AutoFact	Phosphatidate cytidylyltransferase n=1 Tax=Ricinus communis RepID=B9RXC8_RICCO	-	-	73%
FL-Next	sp=Phosphatidate cytidylyltransferase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	phosphatidate cytidylyltransferase	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphatidate cytidylyltransferase.	EC:2.7.7.41	-	0.0	86%

Source	KEGGs	Term	Identity
Blast2go	Glycerophospholipid metabolism	00564	86%
Blast2go	Metabolic pathways	01100	86%
Blast2go	Phosphatidylinositol signaling system	04070	86%

Source	GOs	Term	Type	Identity
Blast2go	phospholipid biosynthetic process	GO:0008654	Biological Process	86%
Blast2go	phosphatidate cytidylyltransferase activity	GO:0004605	Molecular Function	86%
Blast2go	integral to membrane	GO:0016021	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Sma3	Phosphatidate cytidylyltransferase	IPR000374	-	-
Sma3	RNA polymerase II, heptapeptide repeat, eukaryotic	IPR000684	-	-
Sma3	Phosphatidate cytidylyltransferase, eukaryota	IPR016720	-	-

Full-Lengther Next Prediction

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
187	83		16		0.994512
225	83	16			0.994512
322		20		80	0.995493
323		20	80		0.995493
326		80	20		0.995493
327		80		20	0.995493
463		20		80	0.995493
464		20		80	0.995493
465		20	80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain