SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4605

Length: 724 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene4605 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5950	2/9
SustainPine v2.0	sp_v2.0_unigene6102	7/9

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Growth-on protein GRO10 n=1 Tax=Euphorbia esula RepID=Q945B8_EUPES	-	-	4.99983e-42	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Blast2go	signal peptide peptidase-like 2b-like	-	-	0.0	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Aspartic endopeptidases.	EC:3.4.23.-	-	0.0	75%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	75%
Blast2go	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	75%
Blast2go	endosome	GO:0005768	Cellular Component	75%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	75%
Blast2go	plasma membrane	GO:0005886	Cellular Component	75%
Blast2go	integral to membrane	GO:0016021	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	Protease-associated domain, PA	IPR003137	-	-
Sma3	Peptidase A22, presenilin signal peptide	IPR006639	-	-
Sma3	Peptidase A22B, signal peptide peptidase	IPR007369	-	-

Full-Lengther Next Prediction

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
549	87			12	0.992554
584		14	85		0.993533
585	85	14			0.993533
586		14	85		0.993533
588	14	85			0.993533
589			85	14	0.993533
599		16	83		0.994512
600	80	20			0.995493
601		20	80		0.995493
690		50	50		1.0
692		50	50		1.0
693	25	25		50	0.995533
694	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain