SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4602

Length: 1924 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene4602 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17696	23/23

Source	Descriptions	Term	Type	Identity
AutoFact	V-type H+-transporting ATPase subunit I [Arabidopsis thaliana] gb\|AAL31187.1\| AT4g39080/F19H22_180 [Arabidopsis thaliana] gb\|AAO11531.1\| At4g39080/F19H22_180 [Arabidopsis thaliana] dbj\|BAE99335.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEE87015.1\|	-	-	69%
FL-Next	tr=Vacuolar proton atpase, putative; Ricinus communis (Castor bean).	-	-	74%
Blast2go	vacuolar proton	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	cellular response to salt stress	GO:0071472	Biological Process	86%
Blast2go	cellular response to nutrient levels	GO:0031669	Biological Process	86%
Blast2go	ATP synthesis coupled proton transport	GO:0015986	Biological Process	86%
Blast2go	hydrogen-translocating pyrophosphatase activity	GO:0009678	Molecular Function	86%
Blast2go	mitochondrion	GO:0005739	Cellular Component	86%
Blast2go	plant-type vacuole membrane	GO:0009705	Cellular Component	86%
Blast2go	chloroplast	GO:0009507	Cellular Component	86%
Blast2go	plasma membrane	GO:0005886	Cellular Component	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	ATPase, V0/A0 complex, 116kDa subunit	IPR002490	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: B9R827

Fln msg: Overlapping hits, possible frame ERROR between 260 and 244, STOP codon was not found. Distance to subject end: 11 aas, your sequence is shorter than subject: 641 - 810

Fln protein: GSMDSPLLLEQEMLTEPSKQARLGFISGLVPKVKAIPFERILFRATRGNMFLKQSAVEQPVTDPVSGEKVEKIVFVIFYSxxxxxxxKVMKICEAFGANRYPFPEEISKQRQMIGEVSGRLAELQSTIDAGIRHRDNVLTTIGYQFEQWNLLVRTEKAVYNTLNMLSIDVTRKCLVAEGWCPVFAKSQVQDALHRATVDSNSQVGTIFQVLYTKEAPPTYFRTNKFTTAFQEIVDAYGVAKYQEANPGVFTIVTFPFLFAVMFGDWGHGICLLLASLWLICRERKLGSQKLGDIMEMAFGGRYVIFMMAIFSIYCGLIYNEFFSVPFHIFGPSAYACRDSSCRDAYSTGLIKVREAYPFGVDPVWHGSRTELPFLNSLKMKLSILLGVTQMNLGIIMSYFNAKFFHNPLNIWYQFVPQVIF*TACLAIFRSS*SLSGALVPKLIFIMS*YICS*AQLMNLVKINFFGVRGMFRWCYYFWHLLQCLGCFFQSLCF*KGNMTRGFKVAGMAFLQVQTLILLIWIMILTLNMRNLNLVRFSYTR*YIQLNLYWVQSPTLHLILGSGLLAWHMQSYQLCSMKKSCC*LGDTTTSSFSLLGLLCLHLQPLVYCS*WKLLAHFFMHYVFTGLSFKTSSTREMVINSN

Protein Length: 642

Fln nts: AAGGATCTATGGATAGCCCGTTGTTATTAGAGCAGGAAATGTTGACAGAACCTTCAAAGCAAGCAAGGCTGGGGTTTATTAGTGGTCTTGTTCCCAAAGTAAAGGCAATACCTTTTGAAAGGATTCTTTTTCGTGCTACAAGGGGTAACATGTTCTTAAAGCAGTCTGCAGTTGAGCAACCTGTCACTGATCCTGTCTCAGGTGAAAAGGTTGAAAAAATTGTTTTTGTTATTTTTTATTCTxxxxxxxxxxxxxxxxxxxxxAAAGTAATGAAGATTTGTGAAGCCTTTGGGGCAAATCGCTATCCCTTCCCTGAAGAAATCAGTAAACAAAGGCAAATGATAGGAGAGGTTTCTGGAAGGCTCGCAGAGCTGCAAAGCACAATAGATGCTGGCATTCGCCATCGGGATAATGTGTTGACAACAATTGGATATCAGTTTGAACAGTGGAATCTTTTGGTAAGAACAGAGAAAGCTGTTTACAACACTCTGAACATGCTAAGCATTGATGTTACAAGGAAGTGTCTAGTTGCTGAGGGGTGGTGCCCTGTATTTGCAAAAAGTCAGGTTCAAGATGCATTGCATCGTGCAACTGTGGATAGTAACTCACAGGTTGGAACTATATTCCAAGTGCTTTATACAAAGGAGGCACCACCCACATATTTCAGAACAAATAAATTTACCACTGCTTTCCAAGAAATAGTTGATGCATATGGTGTGGCTAAGTACCAAGAGGCAAATCCTGGTGTATTCACCATCGTTACATTTCCATTTTTGTTTGCTGTAATGTTTGGTGACTGGGGCCATGGTATATGTTTATTACTTGCATCCTTGTGGCTCATATGCAGAGAAAGAAAACTTGGTAGTCAGAAACTTGGAGACATAATGGAGATGGCTTTTGGAGGTCGCTATGTGATTTTTATGATGGCAATCTTCTCAATTTACTGTGGACTCATCTACAATGAATTCTTTTCAGTTCCCTTTCACATTTTTGGCCCATCTGCCTATGCATGTCGTGATTCTTCCTGCAGGGATGCTTATTCAACAGGGTTGATAAAGGTTCGTGAGGCCTATCCATTTGGAGTTGATCCGGTGTGGCACGGTAGTCGAACTGAGTTGCCATTTTTAAACTCATTAAAGATGAAACTCTCTATTCTGTTGGGAGTTACACAAATGAATTTGGGAATTATTATGAGCTATTTCAATGCAAAATTCTTTCATAATCCACTGAATATTTGGTACCAATTCGTGCCCCAGGTGATTTTTTGAACAGCCTGTTTGGCTATCTTTCGCTCCTCATAATCATTAAGTGGTGCACTGGTTCCCAAGCTGATCTTTATCATGTCATGATATATATGTTCTTAAGCCCAACTGATGAACTTGGTGAAAATCAACTTTTTTGGGGTCAGAGGAATGTTCAGATGGTGCTACTACTTCTGGCACTTGTTGCAGTGCCTTGGATGCTTCTTCCAAAGCCTCTGCTTCTGAAAAGGCAACATGACCAGAGGCTTCAAGGTCGCGGGTATGGCATTCTTGCAAGTTCAGACGCTGATTCTTTTGATATGGATCATGATCTTGACTCTGAACATGAGGAATTTGAATTTAGTGAGATTTTCGTACACCAGATGATACATACAATTGAATTTGTATTGGGTGCAGTCTCCAACACTGCATCTTATCTTAGGCTCTGGGCTCTTAGCTTGGCACATGCAGAGTTATCAACTGTGTTCTATGAAAAAGTCCTGCTGCTAGCTTGGGGATACAACAACATCTTCATTCTCATTATTGGGATTATTGTGTTTACATTTGCAACCATTGGTGTATTGCTCGTGATGGAAACTCTTAGCGCATTTCTTCATGCACTACGTCTTCACTGGGTTGAGTTTCAAAACAAGTTCTACGAGGGAGATGGTTATAAATTCCAACC

Fln Alignment:

Contig4602___GSMDSPLLLEQEMLTEPSKQARLGFISGLVPKVKAIPFERILFRATRGNMFLKQSAVEQPVTDPVSGEKVEKIVFVIFYSxxxxxxKVMKICEAFGANRYPFPEEISKQRQMIGEVSGRLAELQSTIDAGIRHRDNVLTTIGYQFEQWNLLVRTEKAVYNTLNMLSIDVTRKCLVAEGWCPVFAKSQVQDALHRATVDSNSQVGTIFQVLYTKEAPPTYFRTNKFTTAFQEIVDAYGVAKYQEANPGVFTIVTFPFLFAVMFGDWGHGICLLLASLWLICRERKLGSQKLGDIMEMAFGGRYVIFMMAIFSIYCGLIYNEFFSVPFHIFGPSAYACRDSSCRDAYSTGLIKVREAYPFGVDPVWHGSRTELPFLNSLKMKLSILLGVTQMNLGIIMSYFNAKFFHNPLNIWYQFVPQVIF
B9R827_________________GSIDSPLLLEQEMVTDPSKQVKLGYISGLVPREKSIAFERILFRATRGNVFLKQSVVENSVVDPVSGEKVEKNVFVVFYSxxxxxxKILKICEAFGANRYPFNEDLSKQYQMMTEVSGRLTELKTTIDAGSAHRSNLLQTIGFELEQWNLLVKKEKSIYHTLNMLSMDVTKKCVVAEGWCPVFASDQIRNTLRQATVDSNSQIGAIFQVLQTKESPPTYFLTNKFTSAFQEIVDAYGIAKYQEANPGVYTIITFPFLFAVMFGDWGHGICLLLATLYFITREKKLSSQKLGDIMEMTFGGRYVIMMMAIFSIYTGLIYNEFFSVPFELFGPSAYACRDQSCRDAYTAGLIKVRATYPFGVDPKWHGTRSELPFLNSLKMKMSILLGVAQMNLGIVMSYFNAKFFGDNLNVRYQFVPQMIF

SNPs (tot: 4)

Position	A %	G %	T %	Probability
399	40	60		1.0
1470	83	16		0.994512
1562	22	77		0.999999
1658		16	83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain