SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4601

Length: 1786 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene4601

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3269	24/24

Source	Descriptions	Term	Type	Identity
AutoFact	Hydroxymethylglutaryl-CoA lyase, mitochondrial n=4 Tax=Arabidopsis RepID=HMGCL_ARATH	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	hydroxymethylglutaryl- lyase	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydroxymethylglutaryl-CoA lyase.	EC:4.1.3.4	-	0.0	79%

Source	KEGGs	Term	Identity
Blast2go	Synthesis and degradation of ketone bodies	00072	79%
Blast2go	Valine, leucine and isoleucine degradation	00280	79%
Blast2go	Geraniol degradation	00281	79%
Blast2go	Butanoate metabolism	00650	79%
Blast2go	Metabolic pathways	01100	79%
Blast2go	Biosynthesis of secondary metabolites	01110	79%

Source	GOs	Term	Type	Identity
Blast2go	leucine metabolic process	GO:0006551	Biological Process	79%
Blast2go	hydroxymethylglutaryl-CoA lyase activity	GO:0004419	Molecular Function	79%
Blast2go	mitochondrion	GO:0005739	Cellular Component	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Aldolase-type TIM barrel	IPR013785	-	0.0	-
Sma3	Pyruvate carboxyltransferase	IPR000891	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMI6

Fln msg:

Fln protein: MLTLKTLSRLVQQRPSFSWARIRAPQLIPSFRMSSLEEPVRTDSFSKLNGTGRLSRLSSDSSRKRFDERSSAQDLAGEGDCSCSPMDVNEYVVGSVSWRKEIHDRNGIGSSCMRPLSCCRSYQLLSSGKREIWTLPERHYSSLREETEIRQLTQKLLRGTPKFVKIVEVGPRDGLQNEKNIVPANVKIELIKRLAASGLQVVEATSFVSPKWVPQLADAKEVMDGIKSVAGTRLPVLTPNLKGFHAAIDAGAKEVAVFASASESFSKSNINCTIEESLGRYKEILNAAKRFSVPVRGYVSCVVGCPVEGPISPSSVAYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLDAVMSVVPVEKLAVHFHDTYGQSLANIFVSLQMGISVIDSSISGLGGCPYAKGATGNVATEDVVYLLNGLGVKTNVDLGKLLSAADFICKHLGRQSGSKAGIALSRGIRDHSKM*

Protein Length: 465

Fln nts: CATGGGGAAGGACGACGAAGGGGATGGGGAGGAACAGGGGTTCCTCTCCGCTCTTCTGCTTACAAAGTCCGGTCATTTATTATCTTGGTCATGCTTGCCTGAACTCTACGCAAATATCCTTCAATCCGGCGATTAATTTGGTCTCTTGATCACCGGTTTGAGATTAAATTCCACTGCATTTCGATATCTCTGGAGATCAGGGCAGTCAGCGATTTAGGGATGCAAATAGAGTCAGGACAGGCATAGCGGACACTACGTCCATTGGCATTTTTAAGCTATAACTACTTCTAGGTTTCAAGAAACGG_-_ATGCTTACATTGAAGACCTTGTCCAGATTAGTCCAGCAGAGGCCATCCTTTTCGTGGGCAAGAATCCGAGCTCCACAGTTGATCCCCAGCTTCAGGATGTCCAGTTTGGAGGAGCCTGTCCGAACTGACAGCTTCTCAAAGTTGAATGGCACGGGAAGGTTATCTCGATTATCATCTGACAGTAGTAGGAAGAGATTTGATGAAAGAAGTTCTGCACAAGACTTGGCTGGAGAGGGGGATTGCAGTTGTTCTCCCATGGATGTCAATGAGTATGTTGTGGGATCGGTGTCATGGAGGAAAGAAATACATGACAGGAATGGTATTGGTTCATCTTGCATGAGGCCCTTATCATGCTGTAGAAGTTACCAATTGTTGTCAAGTGGCAAGCGTGAAATTTGGACATTACCAGAGCGCCATTATAGTTCATTACGTGAAGAAACAGAAATAAGGCAACTTACTCAAAAGCTTTTAAGGGGTACACCCAAGTTTGTAAAGATAGTTGAAGTTGGACCAAGAGATGGATTGCAGAATGAGAAGAACATAGTACCAGCAAATGTAAAGATTGAGCTGATCAAAAGGTTGGCTGCCTCTGGCCTGCAAGTTGTAGAGGCTACCAGCTTTGTTTCACCAAAATGGGTTCCACAGTTGGCAGATGCAAAGGAGGTTATGGATGGTATCAAATCAGTGGCTGGTACACGGCTTCCTGTGTTGACGCCAAATTTGAAGGGTTTTCATGCTGCTATTGATGCTGGGGCAAAGGAAGTTGCTGTGTTTGCCTCTGCCTCAGAGTCTTTCTCAAAATCAAACATCAATTGTACTATTGAAGAGAGTTTAGGTCGTTATAAAGAGATCTTGAATGCTGCAAAAAGATTCTCTGTACCTGTACGGGGGTATGTGTCTTGTGTTGTCGGATGTCCTGTTGAAGGCCCCATATCTCCATCCAGCGTAGCATATGTTGCAAAGGAGCTTTATGATATGGGATGCTATGAAATCTCTCTTGGTGACACCATAGGTGTCGGTACTCCAGGCACTGTTGTTCCGATGCTTGATGCTGTAATGAGTGTTGTACCTGTTGAAAAGCTTGCTGTTCATTTCCATGATACTTATGGACAATCACTTGCAAATATTTTTGTTTCGTTACAGATGGGAATTAGTGTCATTGACTCATCAATATCTGGGCTTGGAGGGTGTCCATATGCCAAAGGTGCTACTGGCAATGTAGCAACTGAAGATGTTGTCTATTTACTTAATGGTCTTGGTGTGAAGACAAATGTTGACCTCGGTAAACTGCTTTCAGCAGCCGATTTCATTTGCAAACATTTGGGCCGCCAATCTGGATCAAAAGCAGGAATAGCACTAAGCAGAGGCATAAGAGATCACTCAAAGATGTGA___TATCTAACATGACTTGCAATTTCAACTTTCAAGTGAAGGGGATGTTGTATCTTCAGAGCTTTGTCCAAATGCCTTTGATTAATTATTAC

Fln Alignment:

Contig4601___MLTLKTLSRLVQQRPSFSWARIRAPQLIPSFRMSSLEEPVRTDSFSKLNGTGXXXXXXXXXXXXXFDERSSAQDLAGEGDCSCSPMDVNEYVVGSVSWRKEIHDRNGIGSSCMRPLSCCRSYQLLSSGKREIWTLPERHYSSLREETEIRQLTQKLLRGTPKFVKIVEVGPRDGLQNEKNIVPANVKIELIKRLAASGLQVVEATSFVSPKWVPQLADAKEVMDGIKSVAGTRLPVLTPNLKGFHAAIDAGXXXXXXXXXXXXXXXXXNINCTIEESLGRYKEILNAAKRFSVPVRGYVSCVVGCPVEGPISPSSVAYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLDAVMSVVPVEKLAVHFHDTYGQSLANIFVSLQMGISVIDSSISGLGGCPYAKGATGNVATEDVVYLLNGLGVKTNVDLGKLLSAADFICKHLGRQSGSKAGIALSRGIRDHSKM
B8LMI6_________________MLTFKTLSRLVQQRPSLLWARIPAPQLIPSFRMSSLEEPVRFDSFSKLNGTGRLSRLSSDDSRKRFDERNSAQDLAGERECSCSPMDVEEYVVGSVSWRKEVHDRNGIGSSCMRPLSCCRSYRLLPSGKREIWTLPERHYSSLREETEIRQLTQKLLRGTPMFVKLVEVGPRDGLQNEKNTVPTNVKIELIKRLAASGLQVVEATSFVSPKWVPQLADAKDVMDGIKSVAGTRLPVLTPNLKGFHAAIDAGAKEVAVFASASESFSKSNINCTIEESLCRYKDILNAAKRLCVPVRGYVSCVVGCPVEGPISPSSVAYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLDAVMSVVPVEKLAVHFHDTYGQSLANILVSLQMGISIIDSSISGLGGCPYAKGATGNVATEDVVYLLNGLGVKTNVDLGKLLSAADFICKHLGRQSGSKAGIALSRGTRDHSKM

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
203		50	50		1.0
268	20			80	0.995493
270			20	80	0.995493
271			20	80	0.995493
272			20	80	0.995493
520		33		66	0.997452
558	25	75			0.996473
560		75	25		0.996473
561		75	25		0.996473
562		75	25		0.996473
1498			66	33	0.997452
1501			33	66	0.997452
1621	16	16			0.988813
1626		16	83		0.994512
1627	16		16		0.988813
1658	20			80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain