SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4600

Length: 517 nt

UniGene Fasta

>biog2_v2.0_unigene4600
TTGTACACATATGAGACATCGGATTTCTGGGAGCAGATCAAGACTCCAGGAATGTCTTTGAGATGCTCTTCACTATACCTTTCACAATATCGACTTACTAGTCCTGAACTCTTAGCAAAAAGCGATGGTGGTAGGACTGCTACTATTGTTGGTGATGTTTATATTCATCCTTCAGCAAAAGTGCATCCAACAGCAAAGATTGGGCCAAATGTCTCTATTTCGGCAAATGCTCGTATTGGGGCAGGGGTTAGATTGATTGGTTGCATAATTCTTGATGATGTAGAACTGAAGGAGAATTCAATTGTGATGCACTCCATTGTTGGCTGGAAGTCATCAATAGGAAGATGGTCGAGAGTTCAGGGTGAGGCAAATTATACGTCAAAACTTGGAATTACAATTCTTGGTGAGGACGTGACTGTTGAAGATGAAGTAGTTGTGGCTAACTGTATTGTACTTCCCCATAAGATGCTCAATATGAGTGTACAAGAGGAAATAATTTTGTAACTTGTGCTCATTT

Ace file of the UniGene biog2_v2.0_unigene4600

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3646	7/9
SustainPine v2.0	sp_v2.0_unigene61880	2/9

Source	Descriptions	Term	Type	Identity
AutoFact	Mannose-1-phosphate guanyltransferase, putative n=3 Tax=rosids RepID=B9R8Y9_RICCO	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	adp-glucose pyrophosphorylase-like protein	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Mannose-1-phosphate guanylyltransferase.	EC:2.7.7.13	-	0.0	88%

Source	KEGGs	Term	Identity
Blast2go	Fructose and mannose metabolism	00051	88%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	88%
Blast2go	Metabolic pathways	01100	88%
Blast2go	Biosynthesis of secondary metabolites	01110	88%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	88%
Blast2go	biosynthetic process	GO:0009058	Biological Process	88%
Blast2go	mannose-1-phosphate guanylyltransferase activity	GO:0004475	Molecular Function	88%
Blast2go	peroxisome	GO:0005777	Cellular Component	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Bacterial transferase hexapeptide repeat	IPR001451	-	0.0	-
Sma3	Nucleotidyl transferase	IPR005835	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A8N1

Fln msg: your sequence is shorter than subject: 168 - 308

Fln protein: LYTYETSDFWEQIKTPGMSLRCSSLYLSQYRLTSPELLAKSDGGRTATIVGDVYIHPSAKVHPTAKIGPNVSISANARIGAGVRLIGCIILDDVELKENSIVMHSIVGWKSSIGRWSRVQGEANYTSKLGITILGEDVTVEDEVVVANCIVLPHKMLNMSVQEEIIL*

Protein Length: 169

Fln nts: TTGTACACATATGAGACATCGGATTTCTGGGAGCAGATCAAGACTCCAGGAATGTCTTTGAGATGCTCTTCACTATACCTTTCACAATATCGACTTACTAGTCCTGAACTCTTAGCAAAAAGCGATGGTGGTAGGACTGCTACTATTGTTGGTGATGTTTATATTCATCCTTCAGCAAAAGTGCATCCAACAGCAAAGATTGGGCCAAATGTCTCTATTTCGGCAAATGCTCGTATTGGGGCAGGGGTTAGATTGATTGGTTGCATAATTCTTGATGATGTAGAACTGAAGGAGAATTCAATTGTGATGCACTCCATTGTTGGCTGGAAGTCATCAATAGGAAGATGGTCGAGAGTTCAGGGTGAGGCAAATTATACGTCAAAACTTGGAATTACAATTCTTGGTGAGGACGTGACTGTTGAAGATGAAGTAGTTGTGGCTAACTGTATTGTACTTCCCCATAAGATGCTCAATATGAGTGTACAAGAGGAAATAATTTTGTAA___CTTGTGCTCATTT

Fln Alignment:

Contig4600___LYTYETSDFWEQIKTPGMSLRCSSLYLSQYRLTSPELLAKSDGGRTATIVGDVYIHPSAKVHPTAKIGPNVSISANARIGAGVRLIGCIILDDVELKENSIVMHSIVGWKSSIGRWSRVQGEANYTSKLGITILGXXXXXXXXXXXANCIVLPHKMLNMSVQEEIIL
D5A8N1_________________LYTYETSDFWEQIKTPGMSLRCSSLYLSQYRLTSPELLAKSDGGRTATIVGDVYIHPSAKVHPTAKIGPNVSISANARVGAGVRLIGCIILDDVELKENSIVMHSIVGWKSSIGRWSRVQGEANYTSKFGITILGEDVTVEDEVVVANCIVLPHKMLNMSVQEEIIL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
224		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain