SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4591

Length: 946 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene4591

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene26035	24/24

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin carboxyl-terminal hydrolase isozyme L5, putative n=1 Tax=Ricinus communis RepID=B9S046_RICCO	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	ubiquitin carboxyl-terminal hydrolase l5	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	protein deubiquitination	GO:0016579	Biological Process	83%
Blast2go	shoot morphogenesis	GO:0010016	Biological Process	83%
Blast2go	leaf development	GO:0048366	Biological Process	83%
Blast2go	ubiquitin-specific protease activity	GO:0004843	Molecular Function	83%
Blast2go	protein binding	GO:0005515	Molecular Function	83%
Blast2go	cytoplasm	GO:0005737	Cellular Component	83%
Blast2go	nucleus	GO:0005634	Cellular Component	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	0.0	-
Sma3	Ubiquitinyl hydrolase, UCH37 type	IPR017390	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NV68

Fln msg: Overlapping hits, possible frame ERROR between 395 and 386, your sequence is shorter than subject: 228 - 340

Fln protein: KNFPPELKGLAINNSEPIRAAHNSFARPEPFVSDEQKVADKEDDVYHFISYIPVDGTLYELDGLKEGPISLGQYNGSNDSLEWLKLVQPVIQERIEKYSKSEIRFNLMAIIKNRFDIYKAEQRDLENxxxxxQQQLDASKCNGDDRMDVDNGSGRAIEGLNKSLMEINLELYNVEQKLSMEKDKFKKWKTENIRRKHNYIPFLFNFLKILAEKNQLKPLIEKARHRT*

Protein Length: 229

Fln nts: CCAAAAATTTTCCTCCTGAACTCAAAGGACTTGCTATCAATAATAGTGAACCCATTCGTGCAGCTCACAACAGCTTTGCTAGACCAGAGCCTTTTGTCTCCGATGAACAGAAAGTGGCGGATAAAGAGGATGATGTATACCATTTCATAAGCTATATACCAGTCGATGGCACTCTATATGAGTTAGATGGGTTGAAAGAAGGGCCCATCAGTCTTGGACAGTATAATGGTAGTAATGATAGCCTGGAGTGGTTAAAGTTGGTACAACCAGTGATCCAAGAAAGGATTGAAAAATATTCGAAAAGTGAGATAAGGTTCAATCTCATGGCCATCATAAAAAACAGATTTGATATCTATAAAGCTGAACAGAGGGACCTTGAAAATxxxxxxxxxxxxxxxCAACAACAGTTGGATGCATCCAAATGTAACGGAGATGATAGGATGGATGTCGATAATGGTTCAGGAAGGGCCATTGAAGGTCTGAACAAGTCTCTCATGGAGATAAACTTGGAGCTTTATAATGTTGAGCAGAAATTATCGATGGAGAAAGATAAGTTCAAAAAGTGGAAGACAGAGAATATACGCAGGAAGCACAATTATATACCATTTTTGTTCAATTTTCTCAAAATCTTGGCTGAAAAGAACCAACTCAAGCCTTTGATTGAAAAGGCCAGGCACAGGACATAACGAATCTATCTGAGATGAAGGCAAACTTTTGAGGGAGGTGGATGATAGTTGGGTTGATGATAACTGCTTGTCTTATTCTTTCCAGTCCAAGTGGTCAACTGGCATTTTATAGATGAGTAAAATATGAAATAATATTTTGGGTTATCATAAAGCTCGAACCACCGAGTCTCTAATCTGGCAAGAAAAACCATCTTTGGCAAATGCTTGAAATGCGGCCTCTAATATATTTGGTGTCAAATTATTGCAAAATTGTTGGTCATG

Fln Alignment:

Contig4591___KNFPPELKGLAINNSEPIRAAHNSFARPEPFVSDEQKVADKEDDVYHFISYIPVDGTLYELDGLKEGPISLGQYNGSNDSLEWLKLVQPVIQERIEKYSKSEIRFNLMAIIKNRFDIYKAEQRDLENRxxxIQQQLDASKCNGDDRMDVDNGSGR---AIEGLNKSLMEINLELYNVEQKLSMEKDKFKKWKTENIRRKHNYIPFLFNFLKILAEKNQLKPLIEKA
A9NV68_________________KNFPPELKGLAINNSEAIRAAHNSFARPEPFVSDEQKVADKEDDVYHFISYIPVDGTLYELDGLKEGPISLGQYNGSRESLEWLKLVQPVIQERIEKYSKSEIRFNLMAIIKNRLDIYKAEQRDLENRxxxIQQQLDASKCNGDDRMDVDNGSGRQSASVEGLNRSLVEIDFELANVEQKLSIEKDKFKKWKTENIRRKHNYIPFLFNFLKILAEKDQLKPLIEKA

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
201	71			14	0.984337
203	83		16		0.994512
496	33	66			0.997452
498		66	33		0.997452
499	66		33		0.997452
500			33	66	0.997452
688		14		85	0.993533
828			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain