SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4586

Length: 881 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene4586

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11357	12/12

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	unknown [Picea sitchensis]	-	-	67%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5AC91

Fln msg: STOP codon was not found. Distance to subject end: 3 aas, W1: There is no M at the beginning,

Fln protein: FIAVLSLIYIAFCRDGWFSQVCYNKRGRDEYWNGGLDFPDAKRINSGALMHDSDLMALLEKIDNMDDNNNSPEAVNLVEEETLNGVIKSLEDEIGMKGQGEVEVEVVDVDELCSTEMGSIKQGELTDGNSEETSVSDIGDLHSEAGNLTYYDDVRAELGFFVDHTADELGIIMSHIDGDSVDNIMYSDAVHGYVETSEIFYGSLWEDDIWLLNEHPVVQNVCEPPQQEVGLVVSGGAESDEVGNDIRPIHHRSANE

Protein Length: 257

Fln nts: ATGGGGGGTGTGTAGTTGGAAAATCTGATATACCAACAACATATCCTGCAACTATCGAGCACCCGAGATGTGCATATAAGCGAGGCAGCAGGCTCTAATGTGTGGCACTTGATTTATTGCAGTATTATCTCTTATCTATATTGCGTTTTGCAGAGATGGCTGGTTTTCCCAAGTTTGTTATAATAAGCGAGGGAGAGATGAGTATTGGAATGGCGGCTTGGATTTCCCAGATGCCAAGCGAATCAACAGCGGAGCTTTGATGCATGATAGTGATCTCATGGCCTTGCTTGAAAAGATTGATAATATGGATGATAATAATAATAGTCCAGAAGCTGTGAATCTGGTTGAGGAGGAAACGCTGAATGGAGTCATAAAATCTCTGGAAGATGAAATCGGGATGAAGGGGCAAGGAGAGGTTGAGGTTGAGGTTGTTGATGTTGATGAACTGTGCAGTACTGAGATGGGTTCAATTAAACAAGGCGAATTAACAGATGGGAATTCTGAAGAAACCTCTGTTTCTGATATTGGAGACTTGCATTCAGAAGCTGGGAATTTAACGTATTATGACGATGTTCGTGCAGAGCTCGGTTTCTTCGTGGACCATACTGCTGATGAACTTGGAATCATCATGAGCCATATTGATGGAGATTCGGTGGACAATATTATGTATTCAGATGCTGTGCATGGCTATGTTGAGACTTCTGAGATTTTCTATGGGTCTCTGTGGGAGGATGACATTTGGCTTTTGAATGAACATCCAGTCGTTCAAAATGTGTGTGAACCGCCACAGCAAGAAGTTGGATTGGTAGTCAGTGGAGGAGCTGAGTCTGATGAAGTTGGGAACGATATCAGACCAATCCATCACCGGAGCGCCAATGAGG

Fln Alignment:

Contig4586___FSQVCYNKRGRDEYWNGGLDFPDAKRINSGALMHDSDLMALLEKIDNMDDNNNSPEAVNLVEEETLNGVIKSLEDEIGMKGQGXXXXXXXXXXXLCSTEMGSIKQGELTDGNSE--ETSVSDIGDLHSEAGNLTYYDDVRAELGFFVDHTADELGIIMSHIDGDSVDNIMYSDAVHGYVETSEIFYGSLWEDDIWLLNEHPVVQNVCEPPQQEVGLVVSGGAESDEVGNDIRPIHHRSANE
D5AC91_________________FFQVSYNKRGRDESWNGGLDLPDAKRTNSGTLMHDSDLMALLEKIDNMDDNNSNPETVNGLEDERLNGVIKSLEDEIGLKGQAGVEAVDVDE--LGSTEMVSIKQGELTDGNSEATSTSVSDIGDLHSEAGNLTYYDDVRAELGFFVDHTADELGIIMSHIDGDSMANIMYSDAVHGYVETSEVFYGSLWEDDIWLLNEHPVVQKDFESPQQEVGLVVS-GSEFDEVGNDIRAIHRLSANE

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
256	20		80		0.995493
326			25	75	0.996473
418	66	33			0.997452
873		25	75		0.996473

SSRs (tot: 2)

Start position	End position	Sequence	Length
312	323	ATA ATA ATA ATA	12
413	431	GAGGTT GAGGTT GAGGTT G	19

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain