SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4546

Length: 1442 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene4546 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5790	14/14

Source	Descriptions	Term	Type	Identity
AutoFact	DUF789 domain containing protein	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	53%
Blast2go	protein	-	-	62%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF789	IPR008507	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9RW40

Fln msg: your sequence is longer than subject: 390 - 317

Fln protein: MLKRQIGGRGLFSGRISKHFLLLWGFYMADRNFLAYKMSNCSAYEDSFQTNLERFLNRTTPIMPVQYLSKTSLRDSPLNKWWQPSEAESAEYFSLGDLWDNYNESSVYGTGVPIRLNTGETVVQYYVPYLSALQIYTSTDIRSSSNFRSMRDESDGDFESRDSSSDSSSDSESGHGTDRSLSFRSESCNSSERVGAWDAVSEDSGADPDHLWHLQDRLGHLCFQYFERALPYGRVPLMEKVNQLARGFPELVSLRSVDLSPASWMSVAWYPIYHIPTGRTVRDLSACFLTYHTLSLSFQENEIGQGDTVSGSGTEFSEKYPKDSQRISLPPFGLATYKMQGSLWTSTGSADQQRIFALYSSADSWLKQLRVRHPDFEHPDFEFFASHNV*

Protein Length: 391

Fln nts: CATCCCAATGCCAGTATTGATGGAGCGGATGATGACGGTTGGCGTGGTTGCTCTGAATTTCGGCGTTAATTCTGTGGTTTTGATTGCAAATGC_-_ATGTTGAAAAGACAAATCGGTGGTAGAGGACTGTTTTCTGGGAGAATTTCGAAGCACTTTCTTCTTCTTTGGGGTTTTTATATGGCCGATCGTAATTTTCTTGCGTACAAGATGTCTAATTGTTCAGCGTATGAAGATTCGTTCCAGACGAATCTGGAGCGCTTTTTGAACCGCACTACACCAATCATGCCAGTTCAGTATTTGTCCAAGACATCTCTTCGAGATTCTCCATTGAACAAGTGGTGGCAGCCCTCCGAAGCAGAGTCTGCAGAGTATTTCAGCCTCGGAGATCTCTGGGATAACTACAATGAATCAAGTGTGTACGGAACAGGAGTACCGATCCGTTTGAATACTGGAGAAACTGTAGTTCAATATTATGTGCCTTACCTGTCCGCGCTTCAGATATATACCTCGACTGACATTAGATCGTCTTCAAACTTCAGGAGTATGAGGGATGAGAGTGACGGAGACTTTGAATCGAGGGATTCGAGCAGCGATTCGAGCAGTGATAGTGAAAGTGGACATGGTACTGATAGATCTTTAAGCTTCAGAAGTGAATCCTGCAATTCCAGTGAAAGAGTAGGAGCATGGGATGCTGTCTCCGAAGATTCTGGGGCCGATCCTGATCATTTATGGCATCTACAAGATCGACTTGGGCACCTGTGTTTCCAGTATTTTGAGCGAGCGTTGCCTTATGGAAGAGTCCCTCTAATGGAAAAGGTCAATCAGTTAGCACGTGGATTTCCAGAATTGGTTTCTTTAAGAAGCGTTGATCTTTCTCCAGCAAGTTGGATGTCAGTTGCATGGTATCCTATTTATCACATTCCAACGGGGCGTACGGTTAGGGATCTCTCGGCCTGCTTCTTAACTTATCATACATTGTCTCTCTCCTTCCAAGAGAATGAGATTGGACAAGGTGATACTGTGTCTGGATCTGGGACTGAGTTTTCCGAAAAGTATCCTAAGGATTCCCAACGCATAAGTCTTCCTCCATTTGGACTTGCCACATACAAAATGCAAGGAAGTCTTTGGACTTCTACTGGGAGTGCTGATCAACAACGGATTTTCGCTCTGTATAGCTCTGCCGATTCCTGGTTAAAGCAGCTAAGAGTTAGGCATCCAGATTTTGAGCATCCAGATTTTGAGTTTTTTGCATCTCACAATGTTTGA___ATCCATTTCAAATCCATTGTTGGAGTAACCAACAATACCTGTACTCTTCTTCCTATTTTTGAAGCCATCTGCTAGTTTAAGGCAGAGAACTGAGTTATTTACAAGCGGCAAGTAGCTTTATTTATGTAGGATTAACCTGTTGGAGTGCAGAGAACAGAAGAGAACTTGTAGGATATGAA

Fln Alignment:

Contig4546___SFQTNLERFLNRTTPIMPVQYLSKTSLRDSPLNKWWQPSEAESAEYFSLGDLWDNYNESSVYGTGVPIRLNTGETVVQYYVPYLSALQIYTSTDIRSSSNFRSMRXXXXXXXXXXXXXXXXXXXXXSGHGTDRSLSFRSESCNS---SERVGAWDAVS-EDSGADPDHLWHLQDRLGHLCFQYFERALPYGRVPLMEKVNQLARGFPELVSLRSVDLSPASWMSVAWYPIYHIPTGRTVRDLSACFLTYHTLSLSFQENEIGQGDTVSGSGTEFSEKYPKDSQRISLPPFGLATYKMQGSLWTSTG-SADQQRIFALYSSADSWLKQLRVRHPDFEH
B9RW40_________________SAQSNLDCFLHCTTPLVPSQFLPKTEIRN--LNRLWHPWERDTVEYFTLGDLWNCFDEWSAYGAGVPIALNNGETLVQYYVPYLSAIQIFTSNS--SLNGFRD--------------------EIESGDGETRD-SF-SDSCSDESESDKLWRWDGCSSEEGGFEQDNHWRLNDRLGHLYFQYFERSTPYGRVPLMDKINGLAERYPGLMSLRSVDLSPASWMAVAWYPIYHIPMGRTIKDLSTCFLTYHTLSSSFQDMDL-------DDDIDSPERKRKEGESISLPPFGLATYKMQGNVWISGNCGRDQERLVSLFSVADSWLKQLRVQHHDFNY

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
304		80		20	0.995493
390		25	75		0.996473
391		33	66		0.997452
722	75			25	0.996473
723			25	75	0.996473
725	75		25		0.996473
730	75	25			0.996473
731		25		75	0.996473
917		25	75		0.996473
1001		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain