SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4518

Length: 1743 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene4518 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17379	2/34
SustainPine v2.0	sp_v2.0_unigene60534	32/34

Source	Descriptions	Term	Type	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_116.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=E0CVQ8_VITVI	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	2-oxoglutarate dehydrogenase e2 subunit	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	response to oxidative stress	GO:0006979	Biological Process	78%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	78%
Blast2go	cytosolic ribosome	GO:0022626	Cellular Component	78%
Blast2go	membrane	GO:0016020	Cellular Component	78%
Blast2go	mitochondrion	GO:0005739	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	2-oxo acid dehydrogenase, lipoyl-binding site	IPR003016	-	-
Sma3	2-oxoacid dehydrogenase acyltransferase, catalytic domain	IPR001078	-	-
Sma3	Biotin/lipoyl attachment	IPR000089	-	-
Sma3	Dihydrolipoamide succinyltransferase	IPR006255	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACY2

Fln msg:

Fln protein: MASLLAAARLGRTARLKNPLSAHLSRSSILSALLVGGHEHVQNLSSHVALDAPAGRKDLRVRYIGLYKDSPYQAWTRSFASDTSKLVEALVPFMGESISDGTLSTFLKKPGDRVEVDEPIAQVETDKVTVDVNSPEAGFIEKFVAKEGDTVVPGAKIAIISKSTDGAKPEVSEKDKQAPQPSQPSVTADKKEEKKAKTLPSTGPVEAVAKDKVATPSTPVSPKASPSPSEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMQLRSEYKDAFLEKHGVKLGFMSGFVKGAVSALQSQPTVNAVIDGDDIIYRDYVDISIAVGTPKGLVVPVIRNADRLNFAEIEKTISVLGKKANNGTISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIQNRPMVVGGNIVARPMMYIALTYDHRLIDGREAVYFLRRVKDIIEDPRRLLLDI*

Protein Length: 470

Fln nts: TTCCTCTATtTCCGTTTGTTAGTTGAACATTGTCGTCTGAAGGTGGGCGGCC_-_ATGGCGAGTTTGTTAGCAGCAGCCAGGCTTGGCAGGACCGCGAGGTTGAAGAACCCGCTCTCGGCCCATCTTTCTCGATCAAGTATATTGTCAGCACTTCTAGTTGGAGGACATGAGCATGTTCAAAATCTTTCTTCTCATGTAGCACTGGATGCTCCAGCTGGTAGAAAAGATCTGAGGGTACGCTATATTGGCCTTTACAAAGATTCTCCCTATCAAGCATGGACTAGGTCATTTGCATCGGATACCAGTAAACTTGTTGAGGCTCTGGTGCCATTCATGGGTGAATCGATTTCTGATGGGACTCTTTCAACTTTTCTCAAGAAACCAGGAGATAGAGTTGAGGTTGATGAGCCCATAGCTCAAGTTGAGACGGACAAGGTAACTGTTGATGTTAATAGCCCTGAAGCTGGTTTCATTGAAAAGTTTGTAGCTAAGGAAGGAGATACTGTTGTACCTGGAGCAAAGATAGCTATTATTTCAAAGTCCACGGATGGAGCAAAACCTGAAGTTTCAGAGAAAGACAAGCAAGCACCTCAACCTTCTCAACCATCAGTTACTGCAGATAAGAAGGAAGAAAAAAAAGCTAAGACATTACCATCTACAGGGCCTGTGGAGGCAGTTGCAAAAGACAAAGTGGCCACTCCTTCCACCCCTGTGTCTCCTAAAGCTTCTCCTTCTCCTTCTGAACCTCAGCTTCCTCCGAAGGAAAGGGAAAGAAGGGTTCCCATGACAAGACTACGAAAGCGAGTGGCTACACGTCTGAAAGACTCACAGAACACATTTGCTTTGCTAACTACATTTAATGAAGTTGACATGACAAATTTGATGCAACTTCGTTCTGAGTATAAAGATGCCTTCCTTGAAAAGCATGGTGTCAAGCTGGGTTTCATGTCAGGATTTGTAAAGGGTGCAGTGAGTGCACTTCAGAGTCAACCTACAGTGAATGCTGTCATTGATGGTGATGATATTATATACAGAGATTATGTTGACATCAGCATTGCTGTCGGTACACCAAAGGGGCTTGTTGTACCGGTGATCCGTAATGCAGATCGTTTGAACTTTGCAGAAATAGAGAAAACAATAAGTGTGCTCGGAAAGAAAGCAAATAATGGCACAATATCTATTGATGAAATGGCTGGAGGCACTTTCACCATATCAAATGGTGGTGTGTATGGCAGCCTCTTGAGCACCCCCATCATCAACCCTCCACAGTCTGCCATTTTGGGAATGCATTCCATCCAAAATCGCCCCATGGTTGTTGGTGGAAATATTGTTGCAAGACCTATGATGTACATTGCTCTTACTTATGATCATCGACTCATTGATGGAAGAGAGGCTGTTTACTTCCTTCGACGTGTCAAGGATATAATTGAGGATCCACGGAGGCTTCTGCTTGATATCTAA___AATGATTGCAAACTCTGTCCAGAGGGAGCTGAGATGTTATCAAAGACATGAAAAATGAAGATTTTTGGCTGAATAATATTTAGGCCAGTTTCTTTTGATCTACATGCGTTCTGCACCATATTTTTTATGACATTCGGTTGTTTAAGTGTTAGTTATGAAGAGTCTGCGGTGACGCGGATATTATTATGTTTGCTATCACCGTAATTTACCGATCTTAGCACATTTGGGTACTCGGAGAAGTTCACACCACCGTTTGGACATTTTTCACTTAGAACTTTATTCAC

Fln Alignment:

Contig4518___KNPLSAHLSRSSILSALLVGGHEHVQNLSSHVALDAPAGRKDLRVRYIGLYKDSPYQAWTRSFASDTSKLVEALVPFMGESISDGTLSTFLKKPGDRVEVDEPIAQVETDKVTVDVNSPEAGFIEKFVAKEGDTVVPGAKIAIISKSTDGAKPEVSEKDKQAPQPSQPSVXXXXXXXXXXXTLPSTGPVEAVAKDKVATPSTPVSPKASPSPSEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMQLRSEYKDAFLEKHGVKLGFMSGFVKGAVSALQSQPTVNAVIDGDDIIYRDYVDISIAVGTPKGLVVPVIRNADRLNFAEIEKTISVLGKKANNGTISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIQNRPMVVGGNIVARPMMYIALTYDHRLIDGREAVYFLRRVKDIIEDPRRLLLDI
D5ACY2_________________KNPLFAHLSRSNILSAFLVGGHEHVRNLTSHVTLDASAGRKDLRVPYIGLYKDSPYQSWTRSFASDTSNLIEAVVPFMGESISDGTLATFLKKPGDRVEVDEAIAQVETDKVTVDVTSPEAGFIEKFVAKEGDTVVPGTKVAIISKSADGAKPVVAEKEKQAPQPSQPLPSADKKVAEKAKRLPSAEPVEAVAKDKVATPSTAVSPKASPSPSEPQLPPKERERRVPITRLRKRVATRLKDAQNTFALLTTFNEVDMTNLMQLRSEYKDAFLEKHGVKLGFMSGFVKGAVSALQNQPTVNAVIDGDDIIYRDYIDISIAVGTPKGLVVPVIRNADHLNFAEIEKTISVLGKKANSGTISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIQNRPMVVGGNIVARPMMYIALTYDHRLIDGREAVYFLRRVKDIVEDPRRLLLDI

SNPs (tot: 9)

Position	A %	C %	T %	Probability
674	12		87	0.992554
698	85		14	0.993533
723		14	85	0.993533
730	85	14		0.993533
1212	83	16		0.994512
1213	83	16		0.994512
1285		14	85	0.993533
1360		16	83	0.994512
1702	33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain