SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4485

Length: 977 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene4485

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27905	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Rab2/RabB-family small GTPase n=4 Tax=Physcomitrella patens subsp. patens RepID=A9SC62_PHYPA	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	rab2 -family small gtpase	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	89%
Blast2go	vacuole	GO:0005773	Cellular Component	89%
Blast2go	plasma membrane	GO:0005886	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily, Rab type	IPR003579	-	-
Sma3		IPR013753	-	-
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	RNA polymerase sigma factor 54, interaction	IPR002078	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AD24

Fln msg: Overlapping hits, possible frame ERROR between 417 and 417, and overlapping frame ERROR between 605 and 584, your sequence is shorter than subject: 214 - 234

Fln protein: MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIRNKPIKLQIWDTAGQESFRSITRSYYxxAAGALLVYDITRRETFTHLSTWLEDARQHANPNMTIMLIGNKCDLAHRRAVTTxxxxxxxxxxGLIFLETSAKTSQNVEEAFINTAAKVYQKIEEGILDVSNESLGIKVGYGAGTGAAGSTRNDSIASQRSSCCN*

Protein Length: 215

Fln nts: ATGGGGAGGTTTACCAATGCGAGAAGAAAAACCCGAACAGCGATGCAAGGTGCCCACTATTCATGGATGCTATACATGCATCACACAATTGTTGGATTTAAACTTTCCTTCGGGTCTGGAGTGCAAGTGAATTGAATCGAAAGAGCGAAGCCACAGGAGCCGGTGTCGAATCTGCAGAGTTTGAAG_-_ATGTCTTACGCTTACCTTTTCAAATATATCATAATCGGAGACACTGGCGTAGGTAAATCATGCCTGCTATTACAGTTCACTGATAAACGCTTTCAGCCAGTCCATGACTTGACGATTGGTGTCGAGTTCGGAGCGCGTATGATCACCATTCGCAACAAGCCAATTAAGCTTCAAATATGGGATACTGCAGGGCAAGAGTCATTCCGTTCCATAACCAGATCTTACTACxxxxxxGCAGCTGGAGCACTTTTGGTTTATGATATTACACGGAGGGAAACTTTCACCCATCTTTCTACTTGGTTGGAGGATGCCAGGCAACATGCAAACCCAAATATGACTATCATGCTGATTGGTAACAAGTGTGATCTTGCCCATAGAAGGGCTGTTACGACAGAxxxxxxxxxxxxxxxxxxxxxxxxxxxTGGCTTGATCTTCTTGGAAACTTCTGCAAAGACATCTCAAAATGTTGAGGAGGCCTTCATAAATACAGCTGCTAAGGTTTACCAAAAGATCGAAGAGGGAATACTTGACGTTTCTAATGAGTCTTTGGGTATCAAGGTGGGCTATGGGGCTGGTACTGGAGCAGCTGGGTCAACAAGAAATGATTCCATTGCCTCACAAAGAAGTAGCTGTTGCAATTGA___ACAGGATATTATCAGTGGAATGGAAGGCAGTCTCAATTGGAGTTAGTCTTGCATTTCCACACATCATTAAAAAGGATCGAGAATGCTGTTGTGTTGGAGTATATATGGTGTTTATTGTCCAAATACAGTGCAGATTTTAAGTGTTCTGCTG

Fln Alignment:

Contig4485___MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIRNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------------------RETFTHLSTWLEDARQHANPNMTIMLIGNKCDLAHRRAVTTEExxxxxxxNGLIFLETSAKTSQNVEEAFINTAAKVYQKIEEGILDVSNESLGIKVXXXXXXXXXXSTRNDSIASQRSSCCN
D5AD24_________________MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIRNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRCQLAFMYMIKTEGSRYHFIIKQRETFTHLSTWLEDARQHASPNMTIMLIGNKCDLAHRRAVTTEExxxxxxxNGLIFLETSAKTSQNVEEAFINTAAKVYQKIEEGILDVSNESLGIKVGYGAGTGAAGSTRNDSIASQ-SSCCS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain