SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4483

Length: 1399 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene4483

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17648	5/24
SustainPine v2.0	sp_v2.0_unigene18433	18/24

Source	Descriptions	Term	Type	Identity
AutoFact	aminopeptidase M1 [Arabidopsis thaliana] gb\|AAL38379.1\| AT4g33090/F4I10_20 [Arabidopsis thaliana] gb\|AAN41401.1\| aminopeptidase M [Arabidopsis thaliana] gb\|AAO64746.1\| At4g33090/F4I10_20 [Arabidopsis thaliana] dbj\|BAE99157.1\| aminopeptidase like protein [	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	puromycin-sensitive aminopeptidase	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Aminopeptidases.	EC:3.4.11.-	-	0.0	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	aminopeptidase activity	GO:0004177	Molecular Function	0.0	78%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	78%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase	IPR001930	-	-
Sma3	Peptidase M1, membrane alanine aminopeptidase, N-terminal	IPR014782	-	-
Sma3	Peptidase M1, puromycin-sensitive aminopeptidase	IPR015568	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTV2

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 240 - 281

Fln protein: CGSSCVVDEKLGWEPIPGESHLNAMLRGQILVVLAEFGHEETKVEARRRFNVFLNDRNTTILPADIRKAAYIAVMQNVTTSDKSGYESLLRIFRETDLSQEKVRILGSIASSPDPSVVREALDFSLSSEVRSQDAVFVLYGINKEGRETAWLWLKEKWDFIWKNWGSGFLVTRFINSIVSTFSSEEKADEIKEFFSTRMQPSIERTVNQSIERVRIKAQWVKHVQQQDGLVELLQELAV*

Protein Length: 241

Fln nts: ATATGGTTGCTATACCTGATTTTTCTGCTGGGGCAATGGAGAACTATGGTCTGGTTACATATCGGGAAACTGCTTTGCTATATGATGAGAAGCATTCTGCGGCCGCAAATAAGCAAAGGGTTGCAGTTGTTGTGGCACATGAATTAGCACATCAGTGGTTTGGAAATTTGGTTACGATGGAATGGTGGACTCACCTATGGCTGAATGAGGGGTTTGCGACTTGGGTTAGCTATTTGGCAGTGGATTACCTATTTCCTGAGTGGAAAATATGGACTCAATTTATTGATGAAACAGTGGAGGCTTATAGGTTGGATGGGCTAGTTGAGTCACATCCTATTGAGGTTG_-_ATGTGGGTCTTCTTGTGTTGTTGATGAGAAACTGGGCTGGGAGCCTATTCCAGGTGAGAGTCACTTGAACGCAATGTTAAGAGGGCAGATATTGGTAGTCTTAGCTGAGTTTGGGCATGAAGAAACTAAAGTAGAAGCGAGAAGACGATTCAATGTTTTCTTGAATGACAGAAATACAACAATTCTACCTGCAGACATCAGAAAGGCTGCATACATAGCTGTCATGCAGAATGTCACAACCTCAGATAAATCTGGCTATGAATCTCTGTTGAGAATTTTCAGGGAGACAGATCTAAGTCAAGAAAAAGTTCGCATTTTAGGTTCAATTGCATCATCTCCAGATCCTTCTGTTGTCCGTGAAGCGCTAGACTTCAGTTTGTCTTCTGAGGTGCGGAGCCAAGATGCGGTCTTTGTACTTTATGGAATTAACAAAGAGGGACGTGAGACTGCCTGGCTGTGGTTAAAGGAAAAGTGGGACTTTATCTGGAAAAATTGGGGTTCAGGATTTTTGGTAACTCGTTTCATCAATTCTATTGTATCTACGTTTTCAAGTGAGGAAAAGGCAGATGAAATAAAGGAATTCTTTTCAACCCGAATGCAACCATCGATTGAACGCACAGTTAATCAGAGCATTGAACGAGTTCGGATCAAGGCCCAATGGGTGAAGCATGTTCAGCAGCAGGATGGCTTAGTGGAACTACTGCAGGAACTAGCAGTCTGAAAGTATCTAGCTTACCACTTCCATGCTATGACTGGTTTATGTCATGATTTTCATCGCAATTTCCTTGGTCATCAGAGCATGAATGTTAGGCATTTAATGATTTAAATAAGGCATATTTGATTCTGGATTCGAGTCTTTACGCAAATTTATAAAGTTATTTACTTAAAATGAAATCAAGTCTTATTTGGGGTACTATTGGTAAAGATAGGCATCATGGAATTATATTCATTGCAAATATGTTGCGACGCCATGTAGATGGACCATGATTATCAGGGCATGTGCCTTGACATGCATGAATGGTAACTGATGTTTTGAAGCTTATATTCCCTTTAC

Fln Alignment:

Contig4483___EKLGWEPIPGESHLNAMLRGQILVVLAEFGHEETKVEARRRFNVFLNDRNTTILPADIRKAAYIAVMQNVTTSDKSGYESLLRIFRETDLSQEKVRILGSIASSPDPSVVREALDFSLSSEVRSQDAVFVLYGINKEGRETAWLWLKEKWDFIWKNWGSGFLVTRFINSIVSTFSSEEKADEIKEFFSTRMQPSIERTVNQSIERVRIKAQWVKHVQQQDGLVELLQELA
A9NTV2_________________EKLGWDPIPGESHLNAMLRGQILEVLAQFGDEETKVEARRRFNSFLNDRSTTLLPADIRKAAYTAVMQNVTSSDKSGYESLLRIFRETDLSQEKVRILGSIASSPDSSVVREALDFSLSSEVRNQDAVFVLYGISKEGRETAWLWLKEKWEFISKKLGTGFLITRFITSVASPFSSEKKADEIQEFFSTRMQPSIERTVNQTIEQVQIRAQWVKHVQQQDGLVELLRELA

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
455		66	33		0.997452
466		33		66	1.0
503	25		75		0.996473
504	20			80	0.995493
522	60		40		1.0
524	60		40		1.0
625			14	85	0.993533
680	40			60	1.0
681	40	60			1.0
863	83			16	0.994512
864		83	16		0.994512
865			16	83	0.994512
866		83	16		0.994512
916		16		83	0.994512
919	87		12		0.992554
920	87		12		0.992554
932		10		90	0.90298
955			90	10	0.90298
999	90		10		0.90298
1000		10	90		0.90298
1034		22		77	0.999999
1052	11		88		0.923564
1064	88			11	0.923564
1092	11	88			0.923564
1104			80	20	0.999996
1106			20	80	0.999996
1110		20		80	0.999996
1147	14		85		0.993533
1160		14	85		0.993533
1195	14		85		0.993533
1200		85		14	0.993533
1217			20	80	0.995493
1227	85		14		0.993533
1258	33		66		0.997452
1288	66	33			0.997452
1299		33		66	0.997452
1313		66		33	0.997452
1326	66			33	0.997452
1327		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain