SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4478

Length: 370 nt

UniGene Fasta

>biog2_v2.0_unigene4478
ATGATTAGGGGTATTTAGTGGAGTGGTCGCTGAAATCTCAAACACTGCTTTAAAAAAACAGGTGGATGCGCCAAAGTTTTGGGTTCCAATTATGTGTACGGGATACTCTAGCTTGTTGGGTCAATGAAAAACCAGCTATCCAAATGGAGATCCAGGGTGTTTTCATCAATCTGGTCTTGGTGGAACCCTTTGGTTTGACTCTCATTGAGGAAGCTGCACATGGATTACCTATGGTTGCCACAAAGAATGCAGGACTTGTAGACATTCAATGGGTATATTGAAAATTCTTCTATTTAATATAAAAGTTTGAATGGATATTACATGTGATTGATCACTCAAATTGGTTTATTGTTGTGTAGATGTTGAATAA

Ace file of the UniGene biog2_v2.0_unigene4478

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20750	2/3
SustainPine v2.0	sp_v2.0_unigene70342	1/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Strong similarity to the sucrose-phosphate synthase from Craterostigma plantagineum gb\|Y11795 [Arabidopsis thaliana]	-	-	2.0e-09	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Blast2go	sucrose-phosphate synthase	-	-	5.32664e-11	85%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Glycosyl transferase, family 1	IPR001296	-	-
Sma3	Homeodomain	IPR001356	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Sucrose-phosphate synthase	IPR006380	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3		IPR012287	-	-
Sma3	Sucrose phosphate synthase, plant	IPR012819	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	L-lactate dehydrogenase, active site	IPR018177	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLM0

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 430 aas, your sequence is shorter than subject: 93 - 713

Fln protein: D*GYLVEWSLKSQTLL*KNRWMRQSFGFQLCVRDTLACWVNEKPAIQMEIQGVFINLVLVEPFGLTLIEEAAHGLPMVATKNAGLVDIQWVY*

Protein Length: 94

Fln nts: ATGATTAGGGGTATTTAGTGGAGTGGTCGCTGAAATCTCAAACACTGCTTTAAAAAAACAGGTGGATGCGCCAAAGTTTTGGGTTCCAATTATGTGTACGGGATACTCTAGCTTGTTGGGTCAATGAAAAACCAGCTATCCAAATGGAGATCCAGGGTGTTTTCATCAATCTGGTCTTGGTGGAACCCTTTGGTTTGACTCTCATTGAGGAAGCTGCACATGGATTACCTATGGTTGCCACAAAGAATGCAGGACTTGTAGACATTCAATGGGTATATTGAAAATTCTTCTATTTAATATAAAAGTTTGAATGGATATTACATGTGATTGATCACTCAAATTGGTTTATTGTTGTGTAGATGTTGAATAA

Fln Alignment:

Contig4478___QGVFINLVLVEPFGLTLIEEAAHGLPMVATKNAGLVDI
B8LLM0_________________KGVFINPALVEPFGLTLIEAAAHGLPMVATKNGGPVDI

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
66	66		33		0.997452
276	66	33			0.997452
277			33	66	0.997452
278	66		33		0.997452
288	66		33		0.997452
289			33	66	0.997452
290			33	66	0.997452
293			33	66	0.997452
294	33	66			0.997452
295			33	66	0.997452
296	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain