SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4467

Length: 978 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene4467

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1715	16/16

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Sterile alpha motif (SAM) domain-containing protein [Arabidopsis thaliana] dbj\|BAA97233.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAM62694.1\| unknown [Arabidopsis thaliana] gb\|ABG48419.1\| At5g23680 [Arabidopsis thaliana] gb\|AED93198.1\| Sterile	-	-	3.0e-19	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	sterile alpha motif domain-containing protein	-	-	0.0	57%

Source	InterPros	Term	Type	e value	Identity
Sma3	Sterile alpha motif domain	IPR001660	-	0.0	-
Sma3	Sterile alpha motif/pointed domain	IPR013761	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVS5

Fln msg: STOP codon was not found. Distance to subject end: 8 aas, your sequence is shorter than subject: 325 - 354

Fln protein: SSADIVVNSKRQRMGSVRLGEIGDQSAAYAYSSQDLIRRKKQKQWNQHRLGFSAMLQISQAGLVSYQKTRPLLNISSDEQVILDDPISHCGFPSDEARKMQLNPMCVNKKLRHGRTRRRGVGMVGKMTRTMRVSPESNNNGQDKGSGDDNGFGASYDVDTPECFKDSDLDTSGSPVKETCTIHLDSPDSRPANLGSSECHHTVGEVSGNEREEETWAHNNKESTEYGNGSGLNFPSDSNTRSKQDAMRDRNGDDDKKLVSISAAHYLGMVKDVRAWLNGLGLGRYAELFELHEVEKDVLPLLTLDDLKEMGINAVGARRKIYSAI

Protein Length: 326

Fln nts: TTCCTCGGCAGATATTGTTGTGAACAGCAAGAGACAGAGAATGGGGAGTGTGAGATTGGGAGAGATAGGAGACCAGTCTGCTGCCTATGCCTATTCTTCACAGGACCTTATCAGGAGGAAGAAGCAGAAGCAGTGGAATCAGCATCGACTGGGTTTTTCCGCAATGCTTCAGATTTCCCAGGCGGGTCTGGTAAGTTATCAAAAAACTCGGCCTTTGTTAAACATTAGCAGTGATGAACAGGTCATCCTAGATGACCCAATTTCCCATTGTGGGTTTCCTTCTGATGAGGCTAGGAAAATGCAGCTGAACCCTATGTGTGTTAATAAGAAGCTCAGGCATGGTAGGACACGTAGGAGGGGTGTGGGTATGGTTGGAAAGATGACTAGGACAATGAGAGTGAGCCCTGAGAGCAACAATAATGGGCAGGACAAGGGTTCAGGGGATGATAATGGGTTTGGGGCTTCTTATGATGTTGATACTCCTGAATGCTTCAAGGACTCTGATCTGGACACTTCTGGGAGCCCGGTAAAGGAAACCTGTACAATTCACTTGGATTCGCCTGATTCTCGGCCTGCTAATTTGGGTTCATCTGAGTGCCATCATACAGTGGGGGAAGTATCTGGGAATGAGAGGGAGGAGGAAACATGGGCTCATAATAATAAAGAATCCACAGAGTATGGCAATGGAAGTGGACTGAATTTCCCCTCTGACTCCAACACTAGGTCTAAGCAAGATGCAATGAGAGATCGGAACGGCGATGACGATAAAAAGCTGGTATCTATTAGTGCTGCACACTACTTAGGTATGGTAAAGGATGTCAGGGCATGGTTGAATGGACTTGGACTGGGTAGATACGCAGAACTCTTTGAGCTGCACGAAGTGGAGAAGGATGTCTTGCCATTGTTGACATTAGATGATCTCAAGGAGATGGGAATCAATGCTGTCGGTGCCAGGCGTAAAATATATTCTGCAATTCA

Fln Alignment:

Contig4467___SSADIVVNSKRQRMGSVRLGEIGDQSAAYAYSSQDLIRRKKQKQWNQHRLGFSAMLQISQAGLVSYQKTRPLLNISSDEQVILDDPISHCGFPSDEARKMQLNPMCVNKKLXXXXXXXXXXXXXXXXXXTMRVSPESNNNGQDKGSGDDNGFGASYDVDTPECFKDSDLDTSGSPVKETCTIHLDSPDSRPANLGSSECHHTVGEVSGNEREEETWAHNNKESTEYGNGSGLNFPSDSNTRSKQDAMRDRNGDDDKKLVSISAAHYLGMVKDVRAWLNGLGLGRYAELFELHEVEKDVLPLLTLDDLKEMGINAVGARRKIYSAI
A9NVS5_________________SSADIVVNSKRQRRPSVRLGEIGDQSAAFAYSSQDLIRRKKQKQWNQPPTGFFRNASDFPGGSGKLSKTRPLLNISSDEQVILDEPISHCGFPSDEAGKMQLDPICVSKKLRHGRTRRRGVGLVGKMTRTMRVSPESNNNGQDKGSGDDNGFGASYDVDTPECFKDSDLDTSGSPVKETSTIHLDSPDSRPVNLGSSECHHTVGEVSGNEREEETWAHDNKESTEYGNGSGLNFPSDSNTRSKQDAMRDRNGDDDKKLVSISAAHYLGMVKDVRAWLNGLGLGRYAELFEMHEVEKDVLPLLTLDDLKEMGINAVGARRKIYSAI

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
615	25		75		0.996473
618	25		75		0.996473
620	75		25		0.996473
713		85		14	0.993533
719		87		12	0.992554
720	87		12		0.992554
721		87	12		0.992554
722			12	87	0.992554
750		88	11		0.923564
773	36		54		1.0
953		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain