SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4465

Length: 490 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene4465
ATGCAACCTATTTTAGCCCATGCCAAAACTATCAGAACAAAGAGGGTAAAGGTGCACCGCAAACTTGCAGAAGTACTGGAAGAAGAGTTGAGGAGGCGGGGAGCTGCATGTGTAATTGCCGAGGAAATGTTTGGCAAGTGGAAGGGCTTGCGGGAGACGGTAAACGATCAGGAAATTGTTTGGCCTCCTATGGTTATAATTCAGAACACGCTCCTTGATCAAGATGAAAATGAACAGTGGATTGGAATGGGAAATAAAGAATTGCTGGAGTATTTTAAAGGATATAAAGCCATGAGAGCAAGACATGCATATGGCCCGAAAGGACACCGTGGAATGAGTGTACTGATATTTGAGGAATCGGCAATGGGATACTTGGAGGCAGAGCGCTTACAGAAGCAGTTTTTAAGGAAGGGAGAGGAAAAGATGATTGGGAGCGACGTCGGATCTTATTTCAGCCGGGTGGAAAACGTGTACTATATGGTTACTTGGC

Ace file of the UniGene biog2_v2.0_unigene4465 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25635	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Protein SUPPRESSOR OF GENE SILENCING 3 homolog n=2 Tax=Oryza sativa RepID=SGS3_ORYSJ	-	-	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	58%
Blast2go	protein suppressor of gene silencing 3-like	-	-	68%

Source	InterPros	Term	Type	Identity
Sma3	Lipase, GDSL	IPR001087	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	XS domain	IPR005380	-	-
Sma3	Zinc finger-XS domain	IPR005381	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNA2

Fln msg: Distance to subject end: 142 aas, your sequence is shorter than subject: 163 - 419

Fln protein: MQPILAHAKTIRTKRVKVHRKLAEVLEEELRRRGAACVIAEEMFGKWKGLRETVNDQEIVWPPMVIIQNTLLDQDENEQWIGMGNKELLEYFKGYKAMRARHAYGPKGHRGMSVLIFEESAMGYLEAERLQKQFLRKGEEKMIGSDVGSYFSRVENVYYMVTW

Protein Length: 164

Fln nts: ATGCAACCTATTTTAGCCCATGCCAAAACTATCAGAACAAAGAGGGTAAAGGTGCACCGCAAACTTGCAGAAGTACTGGAAGAAGAGTTGAGGAGGCGGGGAGCTGCATGTGTAATTGCCGAGGAAATGTTTGGCAAGTGGAAGGGCTTGCGGGAGACGGTAAACGATCAGGAAATTGTTTGGCCTCCTATGGTTATAATTCAGAACACGCTCCTTGATCAAGATGAAAATGAACAGTGGATTGGAATGGGAAATAAAGAATTGCTGGAGTATTTTAAAGGATATAAAGCCATGAGAGCAAGACATGCATATGGCCCGAAAGGACACCGTGGAATGAGTGTACTGATATTTGAGGAATCGGCAATGGGATACTTGGAGGCAGAGCGCTTACAGAAGCAGTTTTTAAGGAAGGGAGAGGAAAAGATGATTGGGAGCGACGTCGGATCTTATTTCAGCCGGGTGGAAAACGTGTACTATATGGTTACTTGGC

Fln Alignment:

Contig4465___MQPILAHAKTIRTKRVKVHRKXXXXXXXXXXXXXXACVIAEEMFGKWKGLRETVNDQEIVWPPMVIIQNTLLDQDENEQWIGMGNKELLEYFKGYKAMRARHAYGPKGHRGMSVLIFEESAMGYLEAERLQKQFLRKG
B8LNA2_________________LKPLIDHAKNARQWNVRLHRKLVKVLEEELKRRSAAGFAVQEVYGKWLSLQEGHIDSQIVWPPIVIVENTGFKLQDNQQSSGMGNKELLEAFKAYKPTKAKQAYGPKGHRGRSLLIFEESAVGYLEADRLQKDFLKEG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain