SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4439

Length: 213 nt

UniGene Fasta

>biog2_v2.0_unigene4439
TCATGCAAGTTGATGGAACTTGCAGGGAGATATTGTCGGTCCGTGAATACATTGACGACACGGAAGACTATGTGAATATTCAGCTTGATAACCAGCGTAATGAACTGATCCAGTTGCAGCTCACTCTGACTATAGCAACCTTCGCAATAACCCTTGCTACATTGATGGCAGGAACATTTGGAATGAATATTCATTGCCCATCTACGACAAGCA

Ace file of the UniGene biog2_v2.0_unigene4439

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9461	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	RNA splicing protein mrs2, mitochondrial, putative n=1 Tax=Ricinus communis RepID=B9SXF0_RICCO	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	57%
Blast2go	magnesium transporter mrs2-4-like	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	magnesium ion transport	GO:0015693	Biological Process	75%
Blast2go	transmembrane transport	GO:0055085	Biological Process	75%
Blast2go	magnesium ion transmembrane transporter activity	GO:0015095	Molecular Function	75%
Blast2go	plasma membrane	GO:0005886	Cellular Component	75%
Blast2go	mitochondrion	GO:0005739	Cellular Component	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB	IPR002523	-	0.0	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMA9

Fln msg: Distance to subject end: 34 aas, your sequence is shorter than subject: 70 - 467

Fln protein: MQVDGTCREILSVREYIDDTEDYVNIQLDNQRNELIQLQLTLTIATFAITLATLMAGTFGMNIHCPSTTS

Protein Length: 71

Fln nts: TCATGCAAGTTGATGGAACTTGCAGGGAGATATTGTCGGTCCGTGAATACATTGACGACACGGAAGACTATGTGAATATTCAGCTTGATAACCAGCGTAATGAACTGATCCAGTTGCAGCTCACTCTGACTATAGCAACCTTCGCAATAACCCTTGCTACATTGATGGCAGGAACATTTGGAATGAATATTCATTGCCCATCTACGACAAGCA

Fln Alignment:

Contig4439___VDGTCREILSVREYIDDTEDYVNIQLDNQRNEXXXXXXXXXXXXXXXXXXXXMAGTFGMNI
B8LMA9_________________IDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGVFGMNI

SNPs (tot: 3)

Position	A %	C %	G %	Probability
26	33		66	0.997452
27		33	66	0.997452
28	33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain