SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4428

Length: 2174 nt

UniGene Fasta

>biog2_v2.0_unigene4428
ATGGGGGCCGATATGTTTATCGACATAAAACAATCGTAAAATCTTATCCCCATGACTGACACACCTAAATGTCTTCTTCCATGACTTTCGCAAGCAAATCCTCAGCTCTCAGTTGCGTGTTAAATTACCATATTAGATCCCAGTTGCGTGTTGCTTCACGATACTTGATTATGCTATAGACGCATAAAACCTCAGCAGCTTTAATAGTAGACAAATAACTTAATTCTGAGTGTGCAGCGGGAAGAGGAGGAATAATGGCGAGAGGAAGTCTCGTTTCGTTCTTGAACATCCCCAAGGATTCGCATTTTTCAATGCAAAATCTGCCCTATGGAGTGTTCAGGCCTACGCCTGAACAGCAGCCGAGGCCCGCCGTGGCCATTGGCGAGTATGTTTTGGACCTCAGCGTCTTGGCCCGCGCTGGGCTTTTCCATGGCCCTGTGCTCAAGGGTTCCGATTGTTTTCTCCAGCCATCTCTGAATGCTTTCATGGCTATGGGAAAGCCTGCATGGAAGGAGGCACGCGGAACAATTCAGAAACTTTTGTCAGTTGATGAACCAGTCTTGCGAGATAATGTCGAATTGCAGAAAAGTGCATTGTTACCAATGAGTCAGGTTCAGTTGATGCTGCCTGCTGTAATAGGGGACTATACAGACTTCTTTACCTCCAAGTATCATACAATGAACTGTGGAATCATATTTCGTGGTCCTGAAAATCCTCTTCCTCCAAACTGGCTTCATCTTCCAGTTGCATATCATGGGAGAGCATCCTCTGTTGTTATCTCTGGAACAGATCTTCACAGACCTAGAGGTCAAAAACGTCCAATGGGCACACCTACACCAGGATTTGGACCAAGTGTGAAACTTGATTTTGAGCTAGAAATGGCTATGCTGGTTGGACCTGGAAATGAGTTGGGAACGTCTGTGAGTGTGGATGATGCAGCTGATCATATTTTTGGGCTGGTTCTAATGAATGATTGGAGTGCAAGGGATATACAGGCGTGGGAATATCAACCACTTGGGCCATTTTTGGGAAAGAGCTTTGGAACAAGCATCTCACCCTGGATTGTCACTCTAGAGGCCTTAGAACCTTTCACCTGTGAAGCACTTGTACAGGATCCACCTCCCCTGCCCTATCTCACTGGGAAAAGTAGCAGGACCTATGATATCCCTTTAGAGGTTGCCTTAAAACCAGCCGGGGAAGAGAAAGCTTCTGTTATTTGTAAGAGCAACTTTAAACACCTATATTGGACAATTGAACAACAACTTGCACACCATACCATCAATGGTTGTAATTTGAGGTCTGGAGATTTGCTAGGATCTGGAACCATAAGTGGGCCTGAGCCTGAAAGTTTTGCTTCCCTATTAGAGCTATCATGGGATGGGAAGAAGCCACTGAAACTTGGAAATAATATCTCTCGAACATTTGTGGAAGATGGTGATGAGGTCATTTTAACAGCATGCTGTCAGGGAGATGGATATAAGGTGGGCTTTGGTACATGCTCTGGAAAGATACTACCTGCAATTTCCTGACCAGTAAAGTTATAATCTTTGTTTCCTATTATATGGCACATCTTCAAGACTCTGTTGGGTGAATTCTTTTAGGGAGGCTCAATTGTGATATAGTATGTGCTTCAGCAGGACATTATTTATTGGTAATTCTATTCTAGGTAATGAACTAAAAGCAGCAGAATTGTCAAAGGAATTGGCTAATTTTGTAATTGATCATAAGTTACATACCAGATTGTCAGTTGCCCAATATGGTGATGGCTACCAGGCAGTAGTATCATGCCTTACTGATTCTCAGTCTTTGTGGTCCCCTGTTTTAAACCTTGTTGCCTATCACGTTGGTAATGCTCACTGTGTTGGCTTTTATCTTTCATTCATCAGTTCTTTGGCTGAGACTTTTATTCTTCACTTACCTTGCTTGTTGCTATGGTGGATTTTTTGTATTTACAACTACCAAATGCGTGAGCAAATAATATAGGTGTGTAGGGTTAAGTCTGCGAGTTCGTAGGTTTTTCTACAGTGCTTGTTGGTAGGAGCTGAGAATTTAAGACGACTATATCTTGAAAAAGTTGTTGAAAAATGTTAGTTCTGAAGCAATTCTATGACAACTTGTCTAGAAGTTGAATGTTGTTTACATTGGGTTAATTTCAGACTCTCATAATATACACA

Ace file of the UniGene biog2_v2.0_unigene4428

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15864	4/7
SustainPine v2.0	sp_v2.0_unigene23649	3/7

Source	Descriptions	Term	Type	Identity
AutoFact	Fumarylacetoacetase [Medicago truncatula]	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	uncharacterized protein loc100817986	-	-	80%

Source	InterPros	Term	Type	Identity
Sma3	Fumarylacetoacetase, C-terminal	IPR002529	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Fumarylacetoacetase	IPR005959	-	-
Sma3	Fumarylacetoacetase, C-terminal-related	IPR011234	-	-
Sma3	Fumarylacetoacetase, N-terminal	IPR015377	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABT0

Fln msg:

Fln protein: MARGSLVSFLNIPKDSHFSMQNLPYGVFRPTPEQQPRPAVAIGEYVLDLSVLARAGLFHGPVLKGSDCFLQPSLNAFMAMGKPAWKEARGTIQKLLSVDEPVLRDNVELQKSALLPMSQVQLMLPAVIGDYTDFFTSKYHTMNCGIIFRGPENPLPPNWLHLPVAYHGRASSVVISGTDLHRPRGQKRPMGTPTPGFGPSVKLDFELEMAMLVGPGNELGTSVSVDDAADHIFGLVLMNDWSARDIQAWEYQPLGPFLGKSFGTSISPWIVTLEALEPFTCEALVQDPPPLPYLTGKSSRTYDIPLEVALKPAGEEKASVICKSNFKHLYWTIEQQLAHHTINGCNLRSGDLLGSGTISGPEPESFASLLELSWDGKKPLKLGNNISRTFVEDGDEVILTACCQGDGYKVGFGTCSGKILPAIS*

Protein Length: 426

Fln nts: ATGGGGGCCGATATGTTTATCGACATAAAACAATCGTAAAATCTTATCCCCATGACTGACACACCTAAATGTCTTCTTCCATGACTTTCGCAAGCAAATCCTCAGCTCTCAGTTGCGTGTTAAATTACCATATTAGATCCCAGTTGCGTGTTGCTTCACGATACTTGATTATGCTATAGACGCATAAAACCTCAGCAGCTTTAATAGTAGACAAATAACTTAATTCTGAGTGTGCAGCGGGAAGAGGAGGAATA_-_ATGGCGAGAGGAAGTCTCGTTTCGTTCTTGAACATCCCCAAGGATTCGCATTTTTCAATGCAAAATCTGCCCTATGGAGTGTTCAGGCCTACGCCTGAACAGCAGCCGAGGCCCGCCGTGGCCATTGGCGAGTATGTTTTGGACCTCAGCGTCTTGGCCCGCGCTGGGCTTTTCCATGGCCCTGTGCTCAAGGGTTCCGATTGTTTTCTCCAGCCATCTCTGAATGCTTTCATGGCTATGGGAAAGCCTGCATGGAAGGAGGCACGCGGAACAATTCAGAAACTTTTGTCAGTTGATGAACCAGTCTTGCGAGATAATGTCGAATTGCAGAAAAGTGCATTGTTACCAATGAGTCAGGTTCAGTTGATGCTGCCTGCTGTAATAGGGGACTATACAGACTTCTTTACCTCCAAGTATCATACAATGAACTGTGGAATCATATTTCGTGGTCCTGAAAATCCTCTTCCTCCAAACTGGCTTCATCTTCCAGTTGCATATCATGGGAGAGCATCCTCTGTTGTTATCTCTGGAACAGATCTTCACAGACCTAGAGGTCAAAAACGTCCAATGGGCACACCTACACCAGGATTTGGACCAAGTGTGAAACTTGATTTTGAGCTAGAAATGGCTATGCTGGTTGGACCTGGAAATGAGTTGGGAACGTCTGTGAGTGTGGATGATGCAGCTGATCATATTTTTGGGCTGGTTCTAATGAATGATTGGAGTGCAAGGGATATACAGGCGTGGGAATATCAACCACTTGGGCCATTTTTGGGAAAGAGCTTTGGAACAAGCATCTCACCCTGGATTGTCACTCTAGAGGCCTTAGAACCTTTCACCTGTGAAGCACTTGTACAGGATCCACCTCCCCTGCCCTATCTCACTGGGAAAAGTAGCAGGACCTATGATATCCCTTTAGAGGTTGCCTTAAAACCAGCCGGGGAAGAGAAAGCTTCTGTTATTTGTAAGAGCAACTTTAAACACCTATATTGGACAATTGAACAACAACTTGCACACCATACCATCAATGGTTGTAATTTGAGGTCTGGAGATTTGCTAGGATCTGGAACCATAAGTGGGCCTGAGCCTGAAAGTTTTGCTTCCCTATTAGAGCTATCATGGGATGGGAAGAAGCCACTGAAACTTGGAAATAATATCTCTCGAACATTTGTGGAAGATGGTGATGAGGTCATTTTAACAGCATGCTGTCAGGGAGATGGATATAAGGTGGGCTTTGGTACATGCTCTGGAAAGATACTACCTGCAATTTCCTGA___CCAGTAAAGTTATAATCTTTGTTTCCTATTATATGGCACATCTTCAAGACTCTGTTGGGTGAATTCTTTTAGGGAGGCTCAATTGTGATATAGTATGTGCTTCAGCAGGACATTATTTATTGGTAATTCTATTCTAGGTAATGAACTAAAAGCAGCAGAATTGTCAAAGGAATTGGCTAATTTTGTAATTGATCATAAGTTACATACCAGATTGTCAGTTGCCCAATATGGTGATGGCTACCAGGCAGTAGTATCATGCCTTACTGATTCTCAGTCTTTGTGGTCCCCTGTTTTAAACCTTGTTGCCTATCACGTTGGTAATGCTCACTGTGTTGGCTTTTATCTTTCATTCATCAGTTCTTTGGCTGAGACTTTTATTCTTCACTTACCTTGCTTGTTGCTATGGTGGATTTTTTGTATTTACAACTACCAAATGCGTGAGCAAATAATATAGGTGTGTAGGGTTAAGTCTGCGAGTTCGTAGGTTTTTCTACAGTGCTTGTTGGTAGGAGCTGAGAATTTAAGACGACTATATCTTGAAAAAGTTGTTGAAAAATGTTAGTTCTGAAGCAATTCTATGACAACTTGTCTAGAAGTTGAATGTTGTTTACATTGGGTTAATTTCAGACTCTCATAATATACACA

Fln Alignment:

Contig4428___MARGSLVSFLNIPKDSHFSMQNLPYGVFRPTPEQQPRPAVAIGEYVLDLSVLARAGLFHGPVLKGSDCFLQPSLNAFMAMGKPAWKEARGTIQKLLSVDEPVLRDNVELQKSALLPMSQVQLMLPAVIGDYTDFFTSKYHTMNCGIIFRGPENPLPPNWLHLPVAYHGRASSVVISGTDLHRPRGQKRPMGTPTPGFGPSVKLDFELEMAMLVGPGNELGTSVSVDDAADHIFGLVLMNDWSARDIQAWEYQPLGPFLGKSFGTSISPWIVTLEALEPFTCEALVQDPPPLPYLTGKSSRTYDIPLEVALKPAGEEKASVICKSNFKHLYWTIEQQLAHHTINGCNLRSGDLLGSGTISGPEPESFASLLELSWDGKKPLKLGNNISRTFVEDGDEVILTACCQGDGYKVGFGTCSGKILPAIS
D5ABT0_________________MASGSLVSFLNIPEDSHFSMQNLPYGVFRPTPEQQPRPGVAIGEYVLDLSALARAGLFHGPVLKGSDCFLQPSLNAFMAMGKPAWKEARGTIQKLLSVDEPALRDNAELQKSALLPMSQVQLMLPAVIGDYTDFFTSKYHTMNCGIIFRGPESPLPPNWLHLPVAYHGRASSVVISGTDLHRPRGQKRPVGKPTPGFGPSAKLDFELEMAMLVGPGNELGTSVSVDDAADHIFGLVLMNDWSARDIQAWEYQPLGPFLGKSFGTTVSPWIVTLEALQPFTCEAPVQDPPPLPYLTGKSCRTYDIPLEVALKPAGEDKSSVVCKSNFKHLYWTIEQQLAHHTINGCNLRPGDLLGSGTISGPEPESFGSLLELSWDGKNPLKLGNNISRTFVEDGDEVILTACCQGDGYKVGFGTCSGKILPAIS

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
165	33			66	0.997452
168	66		33		0.997452
169			33	66	0.997452
170			33	66	0.997452
213		75		25	0.996473
214	75		25		0.996473
215	75		25		0.996473
216	75		25		0.996473
217			25	75	0.996473
250			85	14	0.993533
252	85		14		0.993533
253	85		14		0.993533
254			14	85	0.993533
264	57	42			1.0
305	85		14		0.993533
555	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain