SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4415

Length: 966 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene4415 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1402	10/10

Source	Descriptions	Term	Type	Identity
AutoFact	putative inositol 1,3,4-trisphosphate 5/6-kinase [Oryza sativa Japonica Group] dbj\|BAD54694.1\| putative inositol 1,3,4-trisphosphate 5/6-kinase [Oryza sativa Japonica Group]	-	-	43%
FL-Next	sp=Inositol-tetrakisphosphate 1-kinase 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	39%
Blast2go	inositol-tetrakisphosphate 1-kinase 4-like	-	-	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	kinase activity	GO:0016301	Molecular Function	0.0	62%
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	62%

Source	InterPros	Term	Type	Identity
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Inositol-tetrakisphosphate 1-kinase	IPR008656	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Inositol-tetrakisphosphate 1-kinase 4	IPR017418	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O80568

Fln msg: Distance to subject end: 113 aas, your sequence is shorter than subject: 321 - 488

Fln protein: LIQHVAVLYTLQLVKLDVSCPQHSLQATSSAWDVTPDTCIFVTSILDEVICRNICSKGWAVVLQGLENTVSDMSGVTTIQKLQDLLITLSRLNKMALGDSIITVGYVMKWTREKDFLKRGAFPTMPTGNGLTFISMDLDLPLIPQLQTVDVVLHKATDEISSVDEGQLLSISKGVTFSEGMQQLERCMKHLHYHLIDPLENIIPLLDRDAIQHLLQDLDEINNPRNCRIRAPHYLKVSKFDELDLVEKLDQAQLSLPAIVKPQIACDVSNAHTMAVVFKMEEFAELPVPLPSVIQEYIDHGSIVYKVYVLGERVFYAVRSS

Protein Length: 322

Fln nts: CATTGATTCAACATGTGGCAGTGCTGTATACATTACAATTGGTTAAGCTTGATGTTTCCTGTCCACAGCATTCTCTTCAAGCAACTTCCTCAGCTTGGGATGTGACCCCTGATACATGCATTTTTGTGACTTCTATACTGGATGAAGTTATTTGTCGTAATATTTGTAGTAAAGGCTGGGCTGTTGTTCTTCAAGGTTTGGAAAATACTGTTTCAGACATGTCTGGTGTAACAACAATTCAGAAGCTGCAAGATTTACTTATTACTCTATCTCGCCTGAACAAAATGGCTTTGGGAGATTCCATCATTACAGTTGGATATGTTATGAAGTGGACTCGAGAAAAGGATTTTCTCAAGAGAGGTGCATTCCCTACAATGCCAACTGGCAATGGGTTGACATTCATTTCGATGGATCTTGATCTGCCACTAATACCCCAGTTACAGACAGTTGATGTAGTTCTTCACAAAGCGACTGATGAGATTTCCAGTGTTGATGAGGGTCAGTTGTTGAGCATCTCTAAAGGGGTTACATTCTCTGAAGGGATGCAACAGTTGGAGAGGTGTATGAAGCATTTGCATTACCATTTGATAGATCCTTTAGAGAACATTATCCCTTTGCTGGATCGTGATGCCATCCAACATTTATTGCAAGATTTGGATGAAATAAATAATCCAAGAAACTGCAGGATCAGAGCCCCTCATTACCTAAAGGTTTCGAAATTTGATGAGCTAGATTTGGTAGAAAAACTCGACCAAGCACAATTATCTCTTCCAGCAATTGTAAAGCCACAGATTGCTTGCGACGTATCCAATGCACATACCATGGCAGTGGTCTTTAAAATGGAAGAATTTGCTGAACTTCCAGTCCCTCTTCCATCTGTCATTCAGGAATACATCGATCATGGGTCCATTGTGTACAAGGTTTATGTCTTAGGTGAAAGGGTTTTCTATGCAGTTAGAAGCTCCT

Fln Alignment:

Contig4415___LIQHVAVLYTLQLVKLDVSCPQHSLQATSSAWDVTPDTCIFVTSILDEVICRNICSKGWAVVLQGLENTVSDMSGVTTIQKLQDLLITLSRLNKMALGDSIITVGYVMKWTREKDFLKRGAFPTMPTGNGLTFISMDLDLPLIPQLQTVDVVLHKATDEISSVDEGQLLSISK-GVTFSEGMQQLERCMKHLHY-HLIDPLENIIPLLDRDAIQHLLQDLDEINNPRNCRIRAPHYLKVSKFDELDLVEKLDQAQLSLPAIVKPQIACDVSNAHTMAVVFKMEEFAELPVPLPSVIQEYIDHGSIVYKVYVLGERVFYAVRSS
O80568_________________LLRKTAAEYSINCLPLETSLTSVTFGDTLKAW-YSDGSILYVASSRKEEILREL-SPSQLVVLLDVEGDSLEDPNIIHIHSLEELPMTICCINKKAMGDGAAIVAYIMKPSRVEDFAKRGALPMYPTSCGLIFLPLMFEFPLASQLKHADIIFHKATDEILSIELNCSDSKSSVAVTFSTGMEKLKKYMEDQNACAIVDPIRNIYPVVDRLKMQHILLGLEGLGAAGR-KIRGACFLKIDSYDEPDLAQNLSRAGLSLPCIVKPQVACGVADAHSMAIVFRVEDFKNLNTPVPAIIQEYVDHSSRIFKFYVLGETIFHAVKKS

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
728		83		16	0.994512
734		33		66	1.0
760		80		20	0.995493
761	75	25			0.996473
790		60		40	1.0
910	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain