SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4401

Length: 1370 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene4401

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22045	18/18

Source	Descriptions	Term	Type	Identity
AutoFact	PPPDE putative thiol peptidase family protein [Arabidopsis thaliana] dbj\|BAA97165.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAO64931.1\| At5g47310 [Arabidopsis thaliana] dbj\|BAE99462.1\| hypothetical protein [Arabidopsis thaliana] gb\|AED95497.1\|	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	erebp-4 like protein	-	-	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Domain of unknown function DUF862, eukaryotic	IPR008580	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKJ1

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: MRPITSDSDSNSSSRAQLYLNVYDLTPLNNYMYWFGVGIFHSGIEAHGVEYAFGAHDYPTSGVFEVEPKSCPGFIFRRSVQLGNVNMSPLEFRQFVEHMAGSYNGDSYHLIAKNCNHFTDDISRRLTGKSIPGWVNRLARIGSFCNCLLPESIQVTAVRHTPEYQGLSEDGSESRSTEGGIESDGEQDHHLLIPSNGEADSMEREALWETPLKHIKEIL*

Protein Length: 221

Fln nts: GGTTTGCTTCACGGTCATTTTTGGCTGTATTTGAATAAAAATCAGAATCTACATTTACTGTACAGTGTCGTTTAACCTCCTGTTGATGGATCAGAGATGCATCTCAGGAATGTCATGGATCTGAGTATTCACAATTGAATTTTATTGCTGACTGACCGGTGCTCCAGTGGCGGCTGCTGCTGGTAACCTGTTCGACTTTTCTCATAGGTTCTTTGGCTTCGTTCTGTGACAGGCAGAGCAGTTTCAGATTTGGGTGGGTTATGGGGAGCCTTAAGGAGACAAATGAAGTGGAAATAGCCATTCATGTTTAGAGGAAAGGAGCACAGTGCATTCTGAAGGCTGAACA_-_ATGAGACCGATTACTTCAGATTCTGATTCCAACAGCAGCAGCCGAGCTCAACTATATTTGAATGTCTATGATCTGACCCCTTTGAACAACTATATGTACTGGTTTGGCGTCGGCATCTTTCACTCTGGGATTGAAGCTCATGGTGTGGAATATGCTTTTGGAGCACATGATTACCCTACTAGTGGAGTATTTGAAGTGGAACCCAAGAGTTGTCCGGGTTTTATATTCAGGCGCTCTGTTCAATTGGGCAATGTAAATATGTCTCCACTTGAATTCCGACAGTTCGTTGAACATATGGCAGGCAGTTACAATGGTGATTCCTATCATCTCATTGCAAAGAATTGCAATCATTTTACTGATGATATAAGTAGGCGTTTGACAGGAAAGTCCATACCAGGTTGGGTAAACCGACTTGCAAGAATAGGTTCCTTCTGCAACTGTTTGTTGCCAGAAAGTATTCAGGTAACAGCTGTAAGGCATACGCCAGAATATCAAGGGTTGTCAGAAGATGGGTCAGAATCCAGATCAACTGAAGGCGGAATAGAGAGTGATGGGGAGCAAGATCATCATCTTCTAATTCCTTCCAATGGAGAGGCTGACTCAATGGAAAGGGAAGCATTATGGGAAACACCCTTGAAACATATCAAGGAGATCTTGTAAATTTATACCCCGAGCATGTGTTTGCAGTTCATTAGGGAATACAGTATATTCTTTCTGGTTCGTAATCTTTCTGCTGCTCCGTTTCTTCTATACTGAAGTTAGTGCATATCAATTACTTGGTATGGCCTTATTTTCATGGTAAAGCTATTACTTGGGTTAAGTTTCACAGCACTGCAGCTTGTTCCATTTCTTATGAGAGCCAGGGTTATTTTTTCTTATTATTTTCAATAAGCAATGGCCTTTTCTGTCACCAGCTCTTGATTTCCAGTAGGTAGTTTACCGTCACATTTGTGGCTGAAAACAATTAGTTCTGTTAGATTGAATTCATCTGCAGTGTGTTTAATTCAATGAAAAATACATGGGT

Fln Alignment:

Contig4401___RAQLYLNVYDLTPLNNYMYWFGVGIFHSGIEAHGVEYAFGAHDYPTSGVFEVEPKSCPGFIFRRSVQLGNVNMSPLEFRQFVEHMAGSYNGDSYHLIAKNCNHFTDDISRRLTGKSIPGWVNRLARIGSFCNCLLPESIQVTAVRHTPEYQGLSEDGSESRSTEGGIESDGEQDHHLLIPSNGEADSMEREALWETPLKHIKEIL
A9NKJ1_________________RAQLYLNVYDLTPLNNYMYWFGVGIFHSGIEAHGVEYAFGAHDYSSSGVFEVEPKSCPGFIFRRSVSLGTLNMSPFEFRQFVEHMAGSYNGDSYHLIAKNCNHFTDDISKRLTGKSIPGWVNRLARIGSFCNCLLPESIQVTTVRHTPEYQGLSEDGSESRSTEGEIESDGEQD-HLLISSNGEAESIERDILWETPLKHIKEIL

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
907		83		16	0.994512
947	83		16		0.994512
987	66		33		1.0
988	66		33		1.0
989		66	33		1.0
1063		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain