SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4398

Length: 1462 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene4398 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16292	55/55

Source	Descriptions	Term	Type	Identity
AutoFact	26S proteasome regulatory particle non-ATPase subunit8 [Oryza sativa Japonica Group]	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	26s proteasome regulatory particle non-atpase subunit	-	-	94%

Source	GOs	Term	Type	Identity
Blast2go	leaf morphogenesis	GO:0009965	Biological Process	94%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	94%
Blast2go	proteasome complex	GO:0000502	Cellular Component	94%

Source	InterPros	Term	Type	e value	Identity
Sma3	JAB1/Mov34/MPN/PAD-1	IPR000555	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKL6

Fln msg:

Fln protein: MDVIKTQQISARAIEKVIVHPLVLLSIVDNYNRVARDTRKRVIGVLLGTSFRGVVDVTNSYAVPFEEDDKDPSIWFLDHNYHESMFEMFKRINAKEHVVGWYSTGPKLRENDLDVHELFHDYVPNPVLVIIDVQPKELGIPTKAYYAVEEVKENATQKSQKVFVHVPSEICAHEVEEIGVEHLLRDVKDTTISTLATEVSGKLTALKGLEARLREIHGYLDLVVDGRLPLNHEILYHLQDVFNLLPNLNVNELVKAFAVKTNDMMLVIYLSSLIRSVIAMHNLINNKMLNKEHEKLADASSSPITAAAGS*

Protein Length: 312

Fln nts: GGGGGTTTCCGAGAGAGTTTAAATGACTACATATAACTGAAGCTTGTGCGCAGAGCGAACTATTCGTTTTAAGCGGTTTCGGGTTCGAATCTGAGAAGCAGCAACTCGCCTCAAACAAACGGCAGAGGAGAGGAAAG_-_ATGGATGTGATAAAGACGCAGCAGATATCGGCGAGGGCAATAGAGAAAGTGATAGTGCATCCTTTGGTGTTGCTCAGCATCGTGGACAACTACAACAGAGTAGCGAGAGACACAAGGAAACGAGTTATTGGCGTGCTGCTGGGAACCAGCTTCCGCGGAGTCGTAGATGTAACTAATAGCTATGCAGTGCCTTTTGAAGAAGATGACAAGGATCCAAGCATCTGGTTTTTGGATCACAACTATCATGAATCTATGTTTGAAATGTTCAAGCGGATTAATGCAAAGGAGCATGTGGTAGGATGGTATAGCACTGGTCCAAAACTTCGGGAAAATGACTTGGATGTGCATGAGTTGTTCCACGACTATGTGCCCAATCCTGTGCTTGTCATTATTGATGTCCAACCGAAGGAGCTGGGGATTCCTACCAAAGCATACTATGCTGTGGAGGAAGTTAAAGAGAATGCAACTCAGAAAAGCCAGAAGGTATTTGTGCATGTGCCTTCTGAAATTTGTGCTCATGAAGTTGAGGAAATAGGTGTGGAGCACTTGCTAAGGGATGTCAAGGACACAACTATCAGTACTCTTGCAACAGAGGTGAGCGGGAAATTGACAGCATTGAAGGGTCTCGAGGCTCGGCTGAGGGAGATTCATGGATACTTGGATCTAGTAGTTGATGGAAGGCTTCCACTTAACCATGAAATTCTGTACCATCTTCAGGATGTATTCAATCTATTACCTAACTTGAATGTTAATGAGTTAGTGAAGGCTTTTGCAGTGAAAACAAATGACATGATGCTGGTTATCTATCTGTCCTCACTTATTCGGAGTGTCATTGCCATGCATAATCTCATTAACAACAAGATGCTAAACAAGGAACATGAGAAACTTGCAGATGCTTCATCCTCACCCATAACAGCCGCTGCAGGGAGTTAA___GTAGATGCTTCTGATTCCTTGGTAGTAAGAAAGATTGTAGCTGGATTCTTTTCAGAGGTTGTCTTTTGCAGCTCAAAATATTGGAGCTTCTATGAAAATTTTTGTGTACTGCCCATTTTTACCTCAATGCCGGCATTTGACTAGCAATTGGCAAGCAGTGAGTTGTTTTACCAGCTGCAGTCACAGGAACTAGATACTGCTCTTGCTTGGAACTTATTGGTAGCCAGCAGTTTCTTCCCTTTTATACGAGTACTGCATGCTGAAAAGTTCTGGCATTTTTTATTCCATCATATCCTGTGCCATTTTTATTTATCATAGCTAGTGGATGTCAAGCTATCTGAATTAGTAGCTTATTAGTGACATGTATGAAGTTAATAAACAGGAATGGAGTA

Fln Alignment:

Contig4398___MDVIKTQQISARAIEKVIVHPLVLLSIVDNYNRVARDTRKRVIGVLLGTSFRGVVDVTNSYAVPFEEDDKDPSIWFLDHNYHESMFEMFKRINAKEHVVGWYSTGPKLRENDLDVHELFHDYVPNPVLVIIDVQPKELGIPTKAYYAVEEVKENATQKSQKVFVHVPSEICAHEVEEIGVEHLLRDVKDTTISTLATEVSGKLTALKGLEARLREIHGYLDLVVDGRLPLNHEILYHLQDXXXXXXXXXXXXXVKAFAVKTNDMMLVIYLSSLIRSVIAMHNLINNKMLNKEHEKLADASSSPIT
A9NKL6_________________MDVIKTQQISARAIEKVIVHPLVLLSIVDNYNRVARDTRKRVIGVLLGTSFRGIVDVTNSYAVPFEEDDKDPSIWFLDHNYHESMFEMFKRINAKEHVVGWYSTGPKLRENDLDVHELFHDYVPNPVLVIIDVQPKELGIPTKAYYAVEEVKENATQKSQKVFVHVPSEICAHEVEEIGVEHLLRDVKDTTISTLATEVSGKLTALKGLEARLREIHQYLDLVVDGRLPLNHEILYHLQDVFNLLPNLNVNELVKAFAVKTNDMMLVIYLSSLIRSVIAMHNLINNKMLNKEHEKLADASSSPIT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain