SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4381

Length: 520 nt

UniGene Fasta

>biog2_v2.0_unigene4381
TTTGTATCACTTTTGTGTCTTCTCAGATAATGTGCTTGCAACGTCTGTTGTGGTGAACTCTACAACATACCATGCTGATCATCCTGAGCTGCTTGTCTTCCACATAGTCACGGATGGAGTGAATTTTGGAGCCATGCGGGCATGGTTTCGCTATGAATCATTACAAGGGGGCAGCTATAGAAGTACAAAATGTGGATGACTTGGCATGGCTAAATGCATCATATGCCCCTGTCCTGAAGCAGCTGCAAGATGCTGAAACACAAAAGTACTACTTCACAGGTGCCCAGGATAGCAAAAGTGCAATTAAATTTCATAACCCCAAGTACCTTTCTATTTTGAACCACCTCAGATTCTACATTCCTGAAATATATCCTGCACTCGAGAAAGTCGTGTTTCTGGATGATGATGTGGTGGTTCAGAAAGACTTGATGCCACTATTCTCTATAAATTTGCACGGAAATGTGAATGGGGCAGTGGAAACCTGCCTTGAGACTTTTCATCGATACCACAAGTATCTAAA

Ace file of the UniGene biog2_v2.0_unigene4381

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3586	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Glycosyltransferase, CAZy family GT8 n=2 Tax=Selaginella moellendorffii RepID=D8RE39_SELML	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	31%
Blast2go	cazy family gt8	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Polygalacturonate 4-alpha-galacturonosyltransferase.	EC:2.4.1.43	-	0.0	86%

Source	KEGGs	Term	Type	Identity
Blast2go	Starch and sucrose metabolism	00500		86%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		86%
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	86%
Blast2go	polygalacturonate 4-alpha-galacturonosyltransferase activity	GO:0047262	Molecular Function	86%
Blast2go	ATP binding	GO:0005524	Molecular Function	86%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	86%
Blast2go	mitochondrion	GO:0005739	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Glycosyl transferase, family 8	IPR002495	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NYU2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 130 aas, your sequence is shorter than subject: 172 - 381

Fln protein: CITFVSSQIMCLQRLLW*TLQHTMLIILSCLSST*SRME*ILEPCGHGFAMNHYKGAAIEVQNVDDLAWLNASYAPVLKQLQDAETQKYYFTGAQDSKSAIKFHNPKYLSILNHLRFYIPEIYPALEKVVFLDDDVVVQKDLMPLFSINLHGNVNGAVETCLETFHRYHKYL

Protein Length: 173

Fln nts: TTTGTATCACTTTTGTGTCTTCTCAGATAATGTGCTTGCAACGTCTGTTGTGGTGAACTCTACAACATACCATGCTGATCATCCTGAGCTGCTTGTCTTCCACATAGTCACGGATGGAGTGAATTTTGGAGCCATGCGGGCATGGTTTCGCTATGAATCATTACAAGGGGGCAGCTATAGAAGTACAAAATGTGGATGACTTGGCATGGCTAAATGCATCATATGCCCCTGTCCTGAAGCAGCTGCAAGATGCTGAAACACAAAAGTACTACTTCACAGGTGCCCAGGATAGCAAAAGTGCAATTAAATTTCATAACCCCAAGTACCTTTCTATTTTGAACCACCTCAGATTCTACATTCCTGAAATATATCCTGCACTCGAGAAAGTCGTGTTTCTGGATGATGATGTGGTGGTTCAGAAAGACTTGATGCCACTATTCTCTATAAATTTGCACGGAAATGTGAATGGGGCAGTGGAAACCTGCCTTGAGACTTTTCATCGATACCACAAGTATCTAAA

Fln Alignment:

Contig4381___QKYYFTGAQDSKSAIKFHNPKYLSILNHLRFYIPEIYPALEKVVFLDDDVVVQKDLMPLFSINLHGNVNGAVETCLETF
A9NYU2_________________EKAFASGGEDSKSDFPYFLP----------FYIPKIYQNLRRFIYAVPDIIVKGKVEELFQVNLTNSPVAAVEDCSHNF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain