SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4374

Length: 1572 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene4374 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5200	15/15

Source	Descriptions	Term	Type	Identity
AutoFact	Mitogen activated protein kinase 6 n=2 Tax=Pinaceae RepID=C7ENI3_PINTA	-	-	98%
FL-Next	tr=Mitogen activated protein kinase 6; Pinus taeda (Loblolly pine).	-	-	99%
Blast2go	map kinase	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	Mitogen-activated protein kinase.	EC:2.7.11.24	-	0.0	91%

Source	GOs	Term	Type	Identity
Blast2go	conjugation	GO:0000746	Biological Process	91%
Blast2go	mitosis	GO:0007067	Biological Process	91%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	91%
Blast2go	cell division	GO:0051301	Biological Process	91%
Blast2go	MAP kinase activity	GO:0004707	Molecular Function	91%
Blast2go	ATP binding	GO:0005524	Molecular Function	91%

Full-Lengther Next Prediction

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
385		25		75	0.996473
476		33		66	0.997452
478	33			66	0.997452
553	66	33			0.997452
1013		25		75	0.996473
1016			80	20	0.995493
1158	20		80		0.995493
1395		20		80	0.995493
1490	66		33		0.997452
1504	66	33			0.997452
1505		33	66		0.997452
1508			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain