SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4345

Length: 1352 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene4345

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27993	48/52
SustainPine v2.0	sp_v2.0_unigene61346	1/52
SustainPine v2.0	sp_v2.0_unigene63556	1/52
SustainPine v2.0	sp_v2.0_unigene83794	1/52

Source	Descriptions	Term	Type	Identity
AutoFact	Proteasome subunit beta type n=1 Tax=Picea sitchensis RepID=A9NYV8_PICSI	-	-	96%
FL-Next	sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	proteasome subunit beta type 7-a precursor	-	-	92%

Source	GOs	Term	Type	e value	Identity
Blast2go	peptidase activity	GO:0008233	Molecular Function	0.0	92%
Blast2go	proteasome complex	GO:0000502	Cellular Component	0.0	92%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase T1A, proteasome beta-subunit	IPR000243	-	-
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	-
Sma3	Proteasome, beta-type subunit, conserved site	IPR016050	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NYV8

Fln msg:

Fln protein: MANTTIELPPKGGFSFDLCRRNEMLAKKGVQPPSFRKTGTTIVGLVFKDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLELHRYATGRESRVVTALTLLKSHLYSYQGHVSAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESRYKEGMTREEGIKLVCEAICSGIFNDLGSGSNVDVCVITKGQREYLRNYALPNPRTYVSSKGYSFAKGHTEVLSTKIIPLKEHVQIIEGDAMEE*

Protein Length: 275

Fln nts: AAGCAGTGGTATCTTAACGCATGGGGAAAAACACAAATACCAAGTGACGGACTCCTCTTCCCTTTGCCGCGATTTAGGGTTTGGAAGGTCTCAAACTTCGACGGAATTTCACTGATTTCGGGAGTTTGCGGGGTATTATTCTGCGTTTTACAGGGTTTCTGTTCCCATCCGCGAAGCC_-_ATGGCAAATACTACGATCGAACTCCCCCCTAAAGGCGGCTTCAGCTTTGATTTGTGTCGGAGAAATGAAATGCTTGCGAAGAAAGGTGTTCAGCCTCCTTCGTTCCGCAAGACAGGAACAACCATTGTAGGCCTCGTTTTCAAGGATGGAGTCATTCTTGGAGCAGACACTCGTGCAACAGAAGGTCCAATTGTATGTGATAAGAACTGTGAAAAAATACATTATATGGCACCAAACATATACTGCTGTGGAGCTGGAACTGCTGCTGATACAGAAGCAGTGACAGATATGGTTAGCTCCCAACTAGAATTGCACCGCTATGCAACTGGTCGAGAATCGAGGGTTGTCACTGCTCTTACCCTTCTCAAATCTCATCTTTACAGTTACCAAGGCCATGTGAGTGCAGCCCTGGTACTTGGTGGTGTGGATTGTACAGGACCACATTTGCATACAATTTATCCCCATGGATCAACTGACACTTTACCTTTTGCTACAATGGGTTCCGGTTCTCTTGCTGCTATGGCTATGTTTGAATCAAGATACAAAGAAGGCATGACAAGAGAGGAGGGAATAAAGCTGGTTTGTGAAGCTATCTGTTCTGGAATCTTCAATGATCTGGGAAGTGGAAGTAATGTTGACGTATGTGTGATAACAAAGGGTCAAAGAGAATATTTGCGGAATTATGCGCTTCCAAATCCACGTACCTATGTTAGTTCAAAAGGTTATTCATTTGCCAAGGGACATACAGAGGTTCTTTCAACGAAAATAATCCCTTTGAAAGAGCATGTGCAAATTATTGAAGGGGATGCTATGGAAGAGTGA___GTAATGCAGAGTAAGAAACTGAAAGCATGCCTAATGAAAGGAGGCTTCCTGCATCTTTCCCGAGGAAAAAGTATTGTTTATGGATTTGTTTTTATTGTTGATGTGATGGGACAGTTATGCAGTCTTCAGTTTAACATTACTTCACTCATTGCTATTCTGAAACCATCTTATTTTGCAGTGATAAATTCTGGTATTTCTTGGGATAGTTATTTCTCCTATAAATGAATCCTTCACAGTCACTGACATAATTTGGAAACCATTCCATTCAATTAACGAATCGGGACTCGATCCCTGAGATGGATTTTGCGAAAGGAACATCACACAGATATCCAACATATTCTAAAATAGATCT

Fln Alignment:

Contig4345___MANTTIELPPKGGFSFDLCRRNEMLAKKGVQPPSFRKTGTTIVGLVFKDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLELHRYATGRESRVVTALTLLKSHLYSYQGHVSAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESRYKEGMTREEGIKLVCEAICSGIFNDLGSGSNVDVCVITKGQREYLRNYALPNPRTYVSSKGYSFAKGHTEVLSTKIIPLKEHVQIIEGDAMEE
A9NYV8_________________MANTAIELPPKGGFSFDLCRRNEMLAKKGVQSPSFRKTGTTIVGLVFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLELHRYATGRESRVVTALTLLKSHLYSYQGHVSAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESRYREGMTREEGIKLVCQAICSGIFNDLGSGSNVDVCVITKGQKEYLRNYELPNPRTYVSSKGYSFAKGHTEVLSTKITPLKEHVKIIEGDAMEE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain