SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene4314

Length: 1205 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene4314

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21770	13/13

Source	Descriptions	Term	Type	Identity
AutoFact	chloroplast ATP phosphoribosyl transferase [Alyssum montanum]	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	atp phosphoribosyl transferase	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	ATP phosphoribosyltransferase.	EC:2.4.2.17	-	0.0	83%

Source	KEGGs	Term	Identity
Blast2go	Histidine metabolism	00340	83%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	83%
Blast2go	Biosynthesis of plant hormones	01070	83%
Blast2go	Metabolic pathways	01100	83%
Blast2go	Biosynthesis of secondary metabolites	01110	83%

Source	GOs	Term	Type	Identity
Blast2go	histidine biosynthetic process	GO:0000105	Biological Process	83%
Blast2go	ATP phosphoribosyltransferase activity	GO:0003879	Molecular Function	83%
Blast2go	chloroplast	GO:0009507	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	ATP phosphoribosyltransferase HisG	IPR001348	-	-
Sma3	ATP phosphoribosyltransferase, catalytic domain	IPR013820	-	-
Sma3	ATP phosphoribosyltransferase, conserved site	IPR018198	-	-
Sma3	Histidine biosynthesis HisG, C-terminal	IPR013115	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKY9

Fln msg: Overlapping hits, possible frame ERROR between 128 and 128, and overlapping frame ERROR between 580 and 577, your sequence is shorter than subject: 237 - 413

Fln protein: GIAIPKYGIFENISSMDGLAAMPQWTENRPLRIATGFTYLGxxFVKEKGLKNVKFSTADGALEAAPAMGIADAILDLVSSGTTLRENNLKEIKDGTVLESQAVFVASKRALQRKDVLEATHEMLERLEAHLRAVGQFTVTANMRGSSAEEVAERVIKQTDFRGLQGPTVSPVFSKRNGEVKPDYYAIVICxxxxQLYDSVRQLRAIGGSGVLVSPLTYIFDEEPPRWRKLLDQLSL*

Protein Length: 238

Fln nts: ATGGGATCGCAATTCCAAAGTATGGAATTTTTGAGAACATTTCATCTATGGATGGGCTGGCAGCAATGCCTCAATGGACTGAGAACAGGCCTCTACGAATTGCAACAGGATTTACTTACCTAGGTxxxxxxTTTGTGAAGGAGAAGGGGCTAAAGAATGTCAAGTTTTCGACAGCTGATGGAGCATTGGAAGCAGCTCCTGCTATGGGTATAGCCGATGCCATTTTGGACCTTGTGAGCAGTGGAACAACTTTGCGTGAAAACAATCTCAAGGAAATAAAGGATGGAACTGTTCTAGAGAGTCAGGCTGTATTTGTTGCAAGTAAGAGAGCACTTCAGCGCAAGGATGTGCTAGAGGCCACACATGAAATGCTCGAAAGGTTGGAAGCCCATTTAAGAGCAGTTGGTCAGTTTACGGTCACTGCAAACATGCGAGGAAGTTCAGCAGAGGAAGTGGCAGAACGTGTAATCAAGCAAACTGATTTTCGTGGTTTACAGGGGCCCACTGTGAGTCCTGTCTTTTCCAAGAGAAATGGAGAAGTTAAGCCAGATTATTATGCCATAGTCATATGTGTxxxxxxxxxACAACTTTATGATTCTGTCCGCCAGTTGAGAGCAATTGGAGGAAGTGGAGTTCTTGTTTCTCCATTAACATATATTTTTGATGAAGAACCACCAAGATGGCGCAAACTTTTGGACCAGTTAAGTCTTTGACTGCATTCCTATGCCTGCTTCGTTTGCTCACCACTTGTTGTAACAATTCCCTTGTGCAGGAAAAATCTTAGACACTGCTTATTGCTCGGCAGTTTTCCCTCTAGTCTAGTTGAGTTGCATTATTACAATTTCAAGTTGGATGAGAAAGAAGGTAACAATGAAGATCTATGTCAGCCATTTGTATTGAATACACCAGATTTAAGCAGCATTCCCCCATCTTGCTGTCAGGACAGCCAAAGACACTAAAGTTTTAAACAGAACAGGCTATATTTATACTTCTGTATATCAAATTTGTTCATCTAATTCTGTCCCGCTCTTATTACTCAAAAGCGTCTTCAGGAATGTTTTAGTCAATCTGCCAATATCTGTATTGTCTATAGTTTCTTACCCCGGCACCCATAATTGTTGGTAGCAATCTGTTTTCGTCTATTTTCTGTTTGTTTCATGACTAACTGGATCTGATAAACTTTCAATGAGCTGGGATGACAATTTTG

Fln Alignment:

Contig4314___IAIPKYGIFENISSMDGLAAMPQWTENRPLRIATGFTYLGPKFVKEKGLKNVKFSTADGALEAAPAMGIADAILDLVSSGTTLRENNLKEIKDGTVLESQAVFVASKRAL-QRKDVLEATHEMLERLEAHLRAVGQFTVTANMRGSSAEEVAERVIKQTDFRGLQGPTVSPVFSKRNGEVKPDYYAIVICVPxKQLYDSVRQLRAIGGSGVLVSPLTYIFDEEPPRWRKLLDQLSL
B8LKY9_________________IAIPKYGIFQNISSMDELATMPEWTENRPLRITTGFTYLGPKFVKEKGLKHVKFSTADGALEAAPAMGIADAILDLVSSGTTLRENNLKEIKGGTVLESQAVFVASKRALLQRKGVLEATHEMLERLEAHLRAVGQFTVTANMRGSSAEEVAECVLEQTNFRGLQGPTVSPVFSKKNGEVKPDYYAIVICVPxKQLYDSVCQLRKIGGSGVLVSPLTYIFDEEPPRWRKLLDQLNL

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
671	66		33		0.997452
844			25	75	0.996473
885	25		75		0.996473
889	25		75		0.996473
912	75		25		0.996473
962	75	25			0.996473
981		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain